Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20No._204_20[genbank_20GCA_5F000956215.1_202015- 03-19] 14,407 sequences; 146,379,160 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq4155 172 4e-38 seq6044 102 5e-17 seq673 102 5e-17 >seq4155 Length=6305 Score = 172 bits (190), Expect = 4e-38 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 6159 ACGATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATG 6218 || |||| ||| | ||||| |||||||| ||| | || |||||| | ||||| ||| Sbjct 569 ACCATGGCAACCGTAAACGTGAATCGTAACGTGACCGATATCTTCTACAGGTACAAGATG 510 Query 6219 CCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAAC 6278 || |||||| |||||||| |||||||| ||||||||||| || || || || || ||| Sbjct 509 CCTCGCATCAATGCCAAGGTAGAGGGTAAAGGAAACGGTATCAAGACGGTGATCGTGAAC 450 Query 6279 ATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGG 6338 ||| | ||||| ||| ||| | || || || || ||||||||||| || || ||||| Sbjct 449 ATGGCGGAAGTGGCTCGAGCGATTGGTCGTCCCGCTACCTACCCGACCAAGTACTTCGGT 390 Query 6339 TGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 ||||||||||| || || ||||||||||| ||||| Sbjct 389 TGCGAACTTGGAGCGCAAACGCAGTTTGACCACAA 355 >seq6044 Length=6192 Score = 102 bits (112), Expect = 5e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || || | ||||| |||||| || |||||| || ||||||||||| || Sbjct 4502 ACCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGA 4443 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || || | || || | || || ||||| || || || || || ||||| | || Sbjct 4442 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGG 4383 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || || || |||||| || || ||||||||||| || ||||| || || Sbjct 4382 GATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 4323 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | ||||| || |||||||| | |||||| ||||| |||||||| || Sbjct 4322 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 4272 >seq673 Length=10092 Score = 102 bits (112), Expect = 5e-17 Identities = 196/287 (68%), Gaps = 4/287 (1%) Strand=Plus/Minus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 ||||| |||||||| || || || |||| | | |||||||||||||| | | || Sbjct 9802 AACGAACGCTTCATTGTGAATGGTGCGCACGATGCCGCCAAGCTGCAGGATCTGTTGGAT 9743 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494 || || ||||| ||| || ||||| | ||| ||||| ||||||||||| || || | Sbjct 9742 GGATTCATTCGTCGGTTCGTCCTGTGCCCGGAGTGCGACAACCCGGAGACGGATCTGCTG 9683 Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAG 6554 ||||| | |||| || ||||| ||||| ||||| || || || | ||| || | Sbjct 9682 GTGTCGTCAAAGAAGGGTACAATCTCGCAGGGATGCAAGGCCTGTGGCTTCCACGGTCCG 9623 Query 6555 CTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCC--ACCTAAAGACC 6612 || || | ||||| | ||||| ||||| | ||||| || || || | | ||| Sbjct 9622 CTCGAGGTGAACCACAAGGTGAACACGTTCATCATCAAGAACCCACCGAACGTGA--ACC 9565 Query 6613 CTAGCACGCAGGGTTCTTCGCAAAATAAGAGCAACCGTGGCAAGCGC 6659 | | |||||| |||||| | || |||| || |||||||| Sbjct 9564 CGGCGAGCCAGGGTGCTTCGCTGACCGAGGGCAAGCGCAGCAAGCGC 9518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334888388191217