Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20No._204_20[genbank_20GCA_5F000956215.1_202015- 03-19] 14,407 sequences; 146,379,160 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq14080 147 2e-30 seq8295 98.7 9e-16 seq6044 87.8 2e-12 >seq14080 Length=20585 Score = 147 bits (162), Expect = 2e-30 Identities = 379/569 (67%), Gaps = 10/569 (2%) Strand=Plus/Minus Query 50982 CACGTTAAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTT 51041 ||||| |||||| ||||| ||||| |||||||||| |||| ||| |||||||||||| Sbjct 7888 CACGTCAAACTTTCGCTTGCAGCCGTCGTAGTTCATGTACCGAATTTTGCCAAAAATTTC 7829 Query 51042 GCGTTCTTTGAACGGCCTG-TCGTGCACACCGCAAATTGACCACATACAACCCACATAAT 51100 || || || | |||| || || | ||| ||| |||||||| || || || || Sbjct 7828 CCGCTCCTTCCA-TCCCTGATCATGGATGCCGGCAATGGACCACATGCACCCGACGTACC 7770 Query 51101 TGTTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATG 51160 || |||||||| ||||||| ||||| ||||||| ||| | ||||| | | | Sbjct 7769 CATTCGGATCGCGCCCATCCAGACTGTAGCGATCGTTCAGATAGATGGCCGTTTCAAGCG 7710 Query 51161 CCATGTCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAAC 51220 | || | | |||||| || | |||||||| ||||| |||||||||| | | | Sbjct 7709 CTTCCTCGGGCGTTTTCGTCCACTCTAGTATTTTCTTCGCCCAATACATGCGCAGGAACC 7650 Query 51221 CGTGCATCTTGCCCTCGCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGTGAG 51280 ||||||||||| |||| |||||| || || | |||||||| || ||||| | Sbjct 7649 CGTGCATCTTGGCCTCCTTCACTAGCTGCAGCTGGGCTGCGTTCCACAGGTCATCGTGGG 7590 Query 51281 TTTGGCAACTTGCCAGCTCTGTCAAATTGTAAATGTATGAGCGATGATCGTATTTGTGTT 51340 | ||| || |||||||| | |||| || || | ||| | ||| | Sbjct 7589 TGTGGGCTGTTTCCAGCTCTTCCCGCGTGTAGCAATACACACGCTTATCTTTGCGGTGAT 7530 Query 51341 GCTCGATCGTTTCTTGAGCCCATTGTGGT--GCGCCTTCAACACAGTCGTAGCGGTCGTT 51398 |||| |||| | ||||| || || || || | | ||||||| | || Sbjct 7529 CGTCGAGTGTTTTACGCGCCCA--GTCGTACGCACCAGCCAGGTTGTCGTAGTTTTTATT 7472 Query 51399 GTAGAAACAAAAATTGTCGGCCAGTTCGCGGCGTACCACGACTTCGTCGATGTATCTGTC 51458 || ||||||||| ||||| | |||||| |||||||| | |||| ||| | | | Sbjct 7471 GTGGAAACAAAAGTTGTCCGACAGTTCACGGCGTACGATCGCTTCCTCGCAGAACGAAGC 7412 Query 51459 CACACTATCAGGATGCGAAGGCT-TTAAGCTTAAT-ATCTTCAACACAACTCGCTGCACG 51516 ||||| || | || || || | | ||| | | | ||| | | ||||| ||| Sbjct 7411 CACAC--TCGCGCTGTGACGGTTGCCATACTTTTTCACCGCCAAAATCGCACGCTGAACG 7354 Query 51517 GAAATTTGGCCAAAGTGAAACCATGGTGA 51545 |||| || ||||||||||||||||| || Sbjct 7353 GAAAGCTGACCAAAGTGAAACCATGGCGA 7325 >seq8295 Length=14778 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 24994 GAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 |||| ||||| || || || || || | ||||| || ||||||| | || || ||| Sbjct 5148 GAACCATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACTCTTGAGGTCGAGC 5089 Query 25054 CGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 | || ||||| ||||| ||||| || ||| ||||| || || || || || | Sbjct 5088 CTTCGGACACGATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCGG 5029 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | || ||||| | || || ||||||||||| | ||||||| |||||| || || | Sbjct 5028 ATCAGCAGCGTCTGATCTTCGCCGGCAAACAGCTGGAAGATGGCCGCACTCTGTCGGACT 4969 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| || || || |||||||| || || | ||||| Sbjct 4968 ACAACATCCAGAAGGAATCCACCCTTCACCTGGTGCT 4932 >seq6044 Length=6192 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 24981 TTTGTACAAAACGGAACAA--TGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCA 25038 ||||| | | |||| ||| |||| || || || || || | || ||||| |||| | Sbjct 4255 TTTGTGCCAGACGGTTCAAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTA 4314 Query 25039 CAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAG 25098 | | || || ||| | || || || |||||| ||||| || ||| ||||| | Sbjct 4315 CCCTTGAGGTCGAGCCCTCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGG 4374 Query 25099 AAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATC 25158 | || || || || || || ||||| | || || |||||||| || | || |||| | Sbjct 4375 AGGGTATCCCGCCGGATCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCC 4434 Query 25159 GCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| || |||||||||||| || || || || || || ||| | ||||| Sbjct 4435 GCACCCTGTCCGATTACAATATCCAGAAGGAGTCGACCCTTCATCTGGTGCT 4486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433251913967705