Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20No._204_20[genbank_20GCA_5F000956215.1_202015- 03-19] 14,407 sequences; 146,379,160 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq4824 176 8e-39 seq6044 152 9e-32 seq14285 147 4e-30 seq633 141 2e-28 seq6908 95.1 2e-14 seq8951 86.0 1e-11 >seq4824 Length=29019 Score = 176 bits (194), Expect = 8e-39 Identities = 318/465 (68%), Gaps = 0/465 (0%) Strand=Plus/Minus Query 268258 CCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCC 268317 ||||||||||||||| ||||| ||| |||||||| |||||||| | || | || || Sbjct 22913 CCACATTGCTTCGACGTAGTCTTTCGCGTGGCCCCAGTCGCGCTTCGAATCGAGATTACC 22854 Query 268318 GAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCG 268377 ||| | ||| | ||||| ||||||| | || | |||||||||||| || Sbjct 22853 GAGCTCGACGCACTCCTGCTGGCCGAGCGAAATCTTCGCCACCGAGCGAGTGATTTTGCG 22794 Query 268378 GGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGC 268437 ||||| || |||| || | | || ||||||||||| || || ||||| || || Sbjct 22793 TGTCACAAAGTTCTCACCCCTGCGGGGTGATTCGTGGTTGAAAAGAATACCGTTACAGGC 22734 Query 268438 GAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAAC 268497 |||||| || ||||| || || || | || ||||||| | |||| || ||| Sbjct 22733 AAACATGTTGTACGCCTCGCGATAATTGATCACTATCCAGTAGCCGTACATTTTCGCACA 22674 Query 268498 TGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTT 268557 |||||||| || || |||| ||| || || | || || || |||| || || Sbjct 22673 CGCGTACGGCGAGCGCGGATAGAATGGAGTTTTTTCGTTCTGCGGCGTTTCAACCACCTT 22614 Query 268558 GCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGAT 268617 |||| |||| ||||| || ||||| |||||||| || ||||| | ||| | | Sbjct 22613 GCCATAGAGTTCGGACGTGGATGCCTGGTAGAAGCGGACCGTCTTTTCCTGTCCGACGGT 22554 Query 268618 TCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGG 268677 ||||| || || |||| || || || || | ||||||| ||||| ||||| || Sbjct 22553 ACGGATGGCATCAAGCAGCCGCAGCGTACCTACCGCATCCACTTCCGCCGTATATTCGCT 22494 Query 268678 CATCTCGAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATA 268722 || ||||| || | || ||||||||| || || | ||||| || Sbjct 22493 CAGGTCGAACGAAATCTTGACATGGCTTTGCGCAGCAAGGTTGTA 22449 >seq6044 Length=6192 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||| | |||| || || || ||||| || ||||| || |||||||| Sbjct 4501 CCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGAC 4442 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| ||||| | || || || || || Sbjct 4441 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGG 4382 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||||| || |||||| || || | | || || Sbjct 4381 ATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 4322 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| ||||| || ||||||||||| |||||||| |||||||| Sbjct 4321 TCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 4275 >seq14285 Length=18903 Score = 147 bits (162), Expect = 4e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | |||| ||| || |||||||| || ||||| || || || || Sbjct 206 CCTCCTCGCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATATTGTAGTCTGAC 147 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| |||||||| || || | || || || || || Sbjct 146 AGGGTACGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGAGGG 87 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||| || |||||||| ||||| ||| |||||||||||| | || || || Sbjct 86 ATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCGATGGTGTCCGATGGCTCCACC 27 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAG 68440 |||| |||||||| ||||| || || Sbjct 26 TCCAGCGTGATGGTCTTTCCGGTCAG 1 >seq633 Length=15238 Score = 141 bits (156), Expect = 2e-28 Identities = 126/158 (80%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| |||||||| || || | || || || || || ||||||||| Sbjct 1 CCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGAGGGATGCCTTCC 60 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || || |||||||| ||||| ||| |||||||||||| | || || || |||| ||| Sbjct 61 TTATCCTGAATCTTAGCCTTCACGTTCTCGATGGTGTCCGATGGCTCCACCTCCAGCGTG 120 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| || || ||||||||||| |||||||| Sbjct 121 ATGGTCTTTCCGGTCAGAGTCTTGACGAAAATCTGCAT 158 >seq6908 Length=18367 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 195991 TTGGGTCGTCTTTGACGAAATCCACTACATGTCCGACGATGCGCGTGGTACCGTGTGGGA 196050 |||||| ||||| ||||| || ||||||||| |||| | | ||||||| |||||||| Sbjct 2001 TTGGGTGGTCTTCGACGAGATTCACTACATGCGCGACAAGGAGCGTGGTGTGGTGTGGGA 1942 Query 196051 AGAAAGCCTTATCCTCATCCCGGATACCATCCGCTGTGTCTTTTTGTCCGCGACTGTTCC 196110 ||||| |||||||| | ||||| | | | | || || || |||||||||| | || Sbjct 1941 AGAAACGCTTATCCTACTGCCGGACAACGTGCACTACGTGTTCCTGTCCGCGACGATCCC 1882 Query 196111 CAACGCCCGTGACTTTGCCTTGTGG 196135 ||||| || | |||||| |||| Sbjct 1881 GAACGCACGGCAGTTTGCCGAGTGG 1857 >seq8951 Length=23152 Score = 86.0 bits (94), Expect = 1e-11 Identities = 108/146 (74%), Gaps = 3/146 (2%) Strand=Plus/Plus Query 9890 CATTTAGAAGTCTGCGTCAATTGCAAACACGTTGTC--GTCGGCATTC-ATGACGCCCGC 9946 ||||||||| || || || | | || || ||||| | ||| | | ||||| ||| Sbjct 1967 CATTTAGAAATCAGCATCGAGCGTGAATACATTGTCCAGACGGTTTGCCATGACACCCCA 2026 Query 9947 CTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAG 10006 |||||||||||| ||| |||||||||||| | |||||||||||| ||||||| Sbjct 2027 CTTCTGGTACTCGCCAACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTCGAGCGAAATGAA 2086 Query 10007 CTCCATGAAGTCAAAGGGGTTCTCGG 10032 |||||||||| || ||||||| || Sbjct 2087 CTCCATGAAGCTGAACGGGTTCTTGG 2112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921456427326040