Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20No._204_20[genbank_20GCA_5F000956215.1_202015- 03-19] 14,407 sequences; 146,379,160 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq5453 141 2e-28 seq8295 140 8e-28 seq633 127 5e-24 seq13424 122 2e-22 seq4824 114 3e-20 seq14285 113 1e-19 >seq5453 Length=57727 Score = 141 bits (156), Expect = 2e-28 Identities = 149/195 (76%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || ||||||||||| || | || || || |||||| Sbjct 57727 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAG 57668 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| ||| ||||| |||||| || || |||||||| || || || ||| Sbjct 57667 ATCAGACGCTGCTGA---TCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACG 57611 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| || || || || || ||||| ||||| || ||||||||||| Sbjct 57610 TTCTCGATCGTATCCGACGGCTCGACCTCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTC 57551 Query 288460 ACGAATATCTGCATT 288474 ||||| ||||||||| Sbjct 57550 ACGAAGATCTGCATT 57536 >seq8295 Length=14778 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||||| || || || |||| ||| ||| || ||||| || ||||| | Sbjct 4917 CCACCACGGAGTCGGAGCACCAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAC 4976 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | ||||| || ||||||||||||||||| ||| ||| Sbjct 4977 AGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCCGGAGGG 5036 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || || |||||||| || || ||||| ||||| || | || | || || Sbjct 5037 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACC 5096 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| ||||| || || || ||||| |||||||| Sbjct 5097 TCAAGAGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 5143 >seq633 Length=15238 Score = 127 bits (140), Expect = 5e-24 Identities = 128/164 (78%), Gaps = 12/164 (7%) Strand=Plus/Plus Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCT 288372 || ||||| | || ||||| ||||||||||||||||| || |||| ||||| ||| Sbjct 1 CCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTG---ATCTGGAGGGATGCCT 57 Query 288373 TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT---TCTACTTCG 288429 || |||||||| || || || |||||||| || || | || |||| || || || Sbjct 58 TCCTTATCCTGAATCTTAGCCTTCACGTTCTCGATGGTGTC---CGATGGCTCCACCTCC 114 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| ||||| |||||||||||||||||||| |||||||| Sbjct 115 AGCGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAAATCTGCAT 158 >seq13424 Length=49246 Score = 122 bits (134), Expect = 2e-22 Identities = 137/182 (75%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || ||||||||||| || | || || || |||||| Sbjct 179 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAG 120 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| ||| ||||| |||||| || || |||||||| || || || ||| Sbjct 119 ATCAGACGCTGCTGA---TCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACG 63 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| || || || || || ||||| ||||| || ||||||||||| Sbjct 62 TTCTCGATCGTATCCGACGGCTCGACCTCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTC 3 Query 288460 AC 288461 || Sbjct 2 AC 1 >seq4824 Length=29019 Score = 114 bits (126), Expect = 3e-20 Identities = 256/382 (67%), Gaps = 2/382 (1%) Strand=Plus/Plus Query 72416 CCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATAC 72475 ||| || || |||| || | ||||| || ||| |||| || |||| ||||| || Sbjct 22586 CCAGGCATCCACGTCCGAACTCTATGGCAAGGTGGTTGAAACGCCGCAGAACGAAAAAAC 22645 Query 72476 TCCGTTTTATCCTCGAAGCCCTTACG-GTGTTGCAAAGTTGTACGCTTATTGGATCTGTA 72534 ||| || ||||| || || |||| |||| || || |||||| || ||||| | Sbjct 22646 TCCATTCTATCCGCGCTCGCCGTACGCGTGT-GCGAAAATGTACGGCTACTGGATAGTGA 22704 Query 72535 AAAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGA 72594 ||||| || ||| |||| ||||||| || || ||| ||| |||||| ||||| Sbjct 22705 TCAATTATCGCGAGGCGTACAACATGTTTGCCTGTAACGGTATTCTTTTCAACCACGAAT 22764 Query 72595 GTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTT 72654 ||| ||| || | | || ||||| || |||||||| ||| ||||| |||| Sbjct 22765 CACCCCGCAGGGGTGAGAACTTTGTGACACGCAAAATCACTCGCTCGGTGGCGAAGATTT 22824 Query 72655 TCAATGGTGTCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGAT 72714 || | | ||| | | ||||||||| | ||| | || | || ||||| Sbjct 22825 CGCTCGGCCAGCAGGAGTGCGTCGAGCTCGGTAATCTCGATTCGAAGCGCGACTGGGGCC 22884 Query 72715 ATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACT 72774 | ||||| || ||||| |||||||||||||||||| |||| || | ||||| || | Sbjct 22885 ACGCGAAAGACTACGTCGAAGCAATGTGGTTGATGATGCAGCAGAAGCAGCCGGAAGATT 22944 Query 72775 ATGTGATTGCAACAGGGAAAAC 72796 || ||||| || || |||| Sbjct 22945 TCGTCATTGCGACGGGCGAAAC 22966 >seq14285 Length=18903 Score = 113 bits (124), Expect = 1e-19 Identities = 132/176 (75%), Gaps = 12/176 (7%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| ||||| | || || || || ||||| | || ||||| |||||| Sbjct 170 TCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCATCTTCCAGCTGCTTTCCGGCGAAG 111 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || |||| ||||| ||||| |||||||| || || || |||||| Sbjct 110 ATCAGACGCTGCTG---ATCTGGAGGGATGCCTTCCTTATCCTGAATCTTAGCCTTCACG 54 Query 288400 TTTTCTATAGAATCGCTCGAT---TCTACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 || || || | || |||| || || || |||||||| ||||| |||||||| Sbjct 53 TTCTCGATGGTGTC---CGATGGCTCCACCTCCAGCGTGATGGTCTTTCCGGTCAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179436647962946