Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20No._204_20[genbank_20GCA_5F000956215.1_202015- 03-19] 14,407 sequences; 146,379,160 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq1373 102 6e-17 seq4561 91.5 1e-13 >seq1373 Length=8253 Score = 102 bits (112), Expect = 6e-17 Identities = 219/322 (68%), Gaps = 4/322 (1%) Strand=Plus/Plus Query 108340 GCCGGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCC 108399 ||||||||||| ||||| | || || || ||| ||||| ||| | |||||||| Sbjct 6333 GCCGGGTTCGGCGTGACTGGTGGGGTGCACCGGCTGTGGTGCCATCGGTCGTACAAGGCG 6392 Query 108400 ACCGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATC 108459 | ||| || | | |||| | |||| |||| | || || |||||||| ||| Sbjct 6393 AAGCTGCCGCTCCGCATCATCCTCATGTGCTGCTACTCGATAGCCGGCCAGAACACGATC 6452 Query 108460 CCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACAC-GACGGCCGACCC 108518 | ||||| | || || | |||||||||||||||| || || ||||| || || Sbjct 6453 TACGACTGGGTCCGGGACCATCGCATTCACCACAAGTACTCGGAAACGGACGG-TGATCC 6511 Query 108519 ACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGA 108578 ||||||||| ||| |||| ||| || | ||||||| || ||||| ||| | |||| | Sbjct 6512 ACACAACGCGAACCGGGGCTTCCTGTACGCGCACGTCGGCTGGCTGATGCTTCGCAAGCA 6571 Query 108579 CCCCGACGTG-ATCTCGGCCGGTCGAAAAATGGACATGACGGACATATACTCCGATCCGG 108637 ||| || ||| ||| | || || || || ||| | ||||| | |||||||| Sbjct 6572 CCCGGA-GTGCATCAAGAAGGGCCGGCTGATCGATATGTCCGACATCGTCAGCGATCCGG 6630 Query 108638 TGGTAGTGTGGCACACCAAGTA 108659 | ||| || ||| |||||| Sbjct 6631 TCGTACAGTTCCACCACAAGTA 6652 >seq4561 Length=4532 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 108340 GCCGGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCC 108399 ||||||||||| || |||| ||| | ||| ||| ||||||| ||| || || ||||| Sbjct 817 GCCGGGTTCGGAGTTACGGGCGGTGCCCACCGGCTGTGGACGCACCGGGCGTATAAGGCG 758 Query 108400 ACCGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATC 108459 | ||| || || | |||| | |||| || || | || ||||||| | | Sbjct 757 AAGCTGCCGCTCCGGATCATCCTCATGTGCTGCTACTGCCTGTCCGGCCAGAACAGCCTG 698 Query 108460 CCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCA 108519 | ||||||| ||||||| | | || ||||||||||| || ||| || || || Sbjct 697 TACGATTGGGTGCGCGATCACCGCATCCATCACAAGTACTCGGAGACGGACGCGGATCCG 638 Query 108520 CACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGAT 108569 |||||| | ||| | || |||| | | ||||||| || ||||| |||| Sbjct 637 CACAACTCGAACCGTGGCTTCTTCTACGCGCACGTCGGCTGGCTGCTGAT 588 Score = 87.8 bits (96), Expect = 1e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 108881 TGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCG 108940 |||| | ||||| |||||||||||||||||||| |||||||| | ||||||||||| | Sbjct 3705 TGGCCATGGGCGAAGGATGGCACAACTACCACCATGTGTTCCCGTGGGACTACAAGGCGG 3646 Query 108941 CCGAGTTGGGGAACGACT 108958 ||||| |||| ||| ||| Sbjct 3645 CCGAGCTGGGCAACTACT 3628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381705766303608