Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20No._204_20[genbank_20GCA_5F000956215.1_202015- 03-19] 14,407 sequences; 146,379,160 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq8951 116 4e-21 seq8295 87.8 2e-12 seq5453 84.2 2e-11 >seq8951 Length=23152 Score = 116 bits (128), Expect = 4e-21 Identities = 294/437 (67%), Gaps = 9/437 (2%) Strand=Plus/Minus Query 52305 CTGCTGAATGCGTTCGAGCACG-TGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAA 52363 ||| | || ||| |||| ||| |||||||||| || ||||| | ||||| |||| Sbjct 2689 CTGTTCAACGCGATCGAA-ACGCTGCCGTGCGTAAAGAAGAAGGCCGACTGGGCGCTGAA 2631 Query 52364 GTGGATCGAGAGCGACACCGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGA 52423 |||||| ||| | | |||| | | || || |||| || ||||| || || Sbjct 2630 CTGGATCTCCAGCAAGAAGGCCAACTTTGGGGAACGTGTGGTTGCGTTCGCTGCTGTTGA 2571 Query 52424 GGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAAT 52483 |||| | || || ||||||||||| || || || | | || | | ||| |||| Sbjct 2570 GGGCATCTTCTTCAGTGGCAGCTTTGCGGCTATTTTCTGGCTGAAGAAGCGCGGCCTAAT 2511 Query 52484 GCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTT 52543 ||| || ||||||||| |||||| |||| ||||||||||| ||||||||| ||||| Sbjct 2510 GCCAGGGCTGACGTTCTCGAACGAGCTGATCTCGCGCGACGAGGGACTGCACTGTGACTT 2451 Query 52544 TGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA-CACGATCCTGA 52602 ||| ||||| | | | | ||| | ||| | || ||| | || | || Sbjct 2450 TGCCTGCCTGATGTTCCGGTATCTGGTG-CAGAAGCCGTCGA--AGGAGCGCGTAACGGA 2394 Query 52603 GCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCG 52662 | || | || ||||| | |||||| |||| || | || || ||||| |||| Sbjct 2393 G-ATCATTCGCGATGCGGTCGTGATCGAACAGGAATTCCTGACCAAGGCACTGCCAGTCG 2335 Query 52663 AGCTGCTGGGCATGAAC-GCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGT 52721 | |||| ||||||||| ||| | | |||| ||||||| ||||| ||||||||||| Sbjct 2334 ACATGCTCGGCATGAACTGCGAACT-GATGTCGCAGTACATTGAGTTCGTGGCGGATCGG 2276 Query 52722 CTGTTGGTGCAGCTCGG 52738 || || || |||| || Sbjct 2275 TTGCTGCTGGAGCTGGG 2259 >seq8295 Length=14778 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || ||||||||||| || ||| || || || || ||||| |||| Sbjct 4950 GATTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCG 5009 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| || |||||||| || || || ||||| ||| || || | Sbjct 5010 AAGATCAGACGCTGCTGATCCGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACA 5069 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | ||||| | | ||| ||||| | || | || || || || || ||||| Sbjct 5070 TTTTCGATCGTGTCCGAAGGCTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGTGTTTTC 5129 Query 138601 ACAAAAATCTGCATGG 138616 || ||||||||||||| Sbjct 5130 ACGAAAATCTGCATGG 5145 >seq5453 Length=57727 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 138424 TCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAG 138483 ||||| || |||||||||||| || ||| || |||||| || || || |||| || Sbjct 57727 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAG 57668 Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT 138543 || |||||||| || || || || || || || ||||| ||| || || | | Sbjct 57667 ATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTC 57608 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | || || | || ||| ||||| | || | || || ||||||||||| || || Sbjct 57607 TCGATCGTATCCGACGGCTCGACCTCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCACG 57548 Query 138604 AAAATCTGCAT 138614 || |||||||| Sbjct 57547 AAGATCTGCAT 57537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496173029345040