Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20No._204_20[genbank_20GCA_5F000956215.1_202015- 03-19] 14,407 sequences; 146,379,160 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq5453 143 3e-29 seq13424 134 2e-26 seq6044 125 8e-24 seq14285 107 2e-18 seq8295 105 8e-18 >seq5453 Length=57727 Score = 143 bits (158), Expect = 3e-29 Identities = 147/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||||| |||||||| |||| || ||||||||||||||||| Sbjct 57727 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAG 57668 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| |||||||| || | ||| | | |||||||||| |||||| ||||| || Sbjct 57667 ATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTC 57608 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||| || || || || |||| |||||||| ||||| ||||| || || || Sbjct 57607 TCGATCGTATCCGACGGCTCGACCTCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCACG 57548 Query 46583 AAGATTTGCATT 46594 ||||| |||||| Sbjct 57547 AAGATCTGCATT 57536 >seq13424 Length=49246 Score = 134 bits (148), Expect = 2e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||||| || |||||| ||||| ||||||||||| |||||||| |||| || Sbjct 197 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 138 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||||||||| |||| |||||||| || | ||| | | |||||||||| | Sbjct 137 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGG 78 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||||| || | | ||| || || || || |||| |||||||| ||| Sbjct 77 ATCTTGGCCTTGACGTTCTCGATCGTATCCGACGGCTCGACCTCCAGAGTGATGGTCTTG 18 Query 46565 CCCGTCAGCGTTTTAAC 46581 || ||||| || || || Sbjct 17 CCAGTCAGAGTCTTCAC 1 >seq6044 Length=6192 Score = 125 bits (138), Expect = 8e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||||||| | || |||||| ||||||||||| ||||| || ||||| | || || Sbjct 4484 CACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGACAGGGTGCGGCCATCCTC 4425 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||||||||| || | |||||||| || | ||| | | |||||||||| Sbjct 4424 CAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCCTG 4365 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||||| ||| | || | | ||| || | || || || | || ||||| || Sbjct 4364 GATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTT 4305 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGCAC 46600 ||||| || ||||| || ||||| ||||| ||| || Sbjct 4304 ACCCGTGAGGGTTTTGACGAAGATCTGCATCTTGAAC 4268 >seq14285 Length=18903 Score = 107 bits (118), Expect = 2e-18 Identities = 161/227 (71%), Gaps = 10/227 (4%) Strand=Plus/Minus Query 46353 TACTATATTATTT----GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTT 46408 || || ||||||| |||||||| | ||| | |||||| || | || |||||| Sbjct 224 TATTAAATTATTTAGAAGCCTCCTCGCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTC 165 Query 46409 TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAG 46468 |||||||||||||| || || || || | || || |||||||| |||||||| |||| Sbjct 164 TGGATATTGTAGTCTGACAGGGTACGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGA 105 Query 46469 CGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACC 46528 |||||||| || | || | || ||||| ||| ||||| ||| | || | | Sbjct 104 CGCTGCTGATCTGGAGGGATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCGATG 45 Query 46529 GTGTCGCTCGAT---TCCACATCCACCGTGATGGTTTTGCCCGTCAG 46572 ||||| |||| ||||| |||| ||||||||| || || ||||| Sbjct 44 GTGTC---CGATGGCTCCACCTCCAGCGTGATGGTCTTTCCGGTCAG 1 >seq8295 Length=14778 Score = 105 bits (116), Expect = 8e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| || |||||||| | || || ||||| ||||||||||| Sbjct 4953 TCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCGAAG 5012 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| |||||||| || | || | | |||||||||| |||||| ||| | | Sbjct 5013 ATCAGACGCTGCTGATCCGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTT 5072 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| | || || || | |||||||| ||||| || || ||||| || Sbjct 5073 TCGATCGTGTCCGAAGGCTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGTGTTTTCACG 5132 Query 46583 AAGATTTGCAT 46593 || || ||||| Sbjct 5133 AAAATCTGCAT 5143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565136607629640