Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20No._204_20[genbank_20GCA_5F000956215.1_202015- 03-19] 14,407 sequences; 146,379,160 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq5453 105 4e-18 seq8295 98.7 6e-16 seq6044 96.9 2e-15 seq13424 89.7 3e-13 >seq5453 Length=57727 Score = 105 bits (116), Expect = 4e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | ||| | || |||||||| || ||||| || Sbjct 57727 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAG 57668 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| ||| |||| | ||||||||||| ||||| |||||| Sbjct 57667 ATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTC 57608 Query 34911 GCTATCG-ATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | |||| || | |||| || || || | || ||||| || || || ||||||||||| Sbjct 57607 TCGATCGTATCCGACGGC-TCGACCTCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCAC 57549 Query 34970 AAAGATCTGCAT 34981 ||||||||||| Sbjct 57548 GAAGATCTGCAT 57537 >seq8295 Length=14778 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| ||| ||| ||||| ||||| |||||||| || | || |||| ||| Sbjct 4935 ACCAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCATCTTCC 4994 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| ||||| || || || || ||||| || | || | ||||||||||| Sbjct 4995 AGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATTCCCTCCTTGTCCTGG 5054 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || || | | |||| || | ||| || || | || ||||| || Sbjct 5055 ATCTTGGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGAGTGATGGTCTTG 5114 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| || ||||| || |||||||| Sbjct 5115 CCGGTGAGTGTTTTCACGAAAATCTGCAT 5143 >seq6044 Length=6192 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || || || || ||| | || |||| |||||||| || ||||| || Sbjct 4465 TCCTTCTGGATATTGTAATCGGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAG 4406 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || |||| | ||||||||||| |||||| || || || Sbjct 4405 ATGAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCCTGGATCTTCGCCTTCAC--AT 4348 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || |||| || || ||| || || | ||| ||||| || |||||||| || || | Sbjct 4347 TCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGA 4288 Query 34969 CAAAGATCTGCATATT 34984 | ||||||||||| || Sbjct 4287 CGAAGATCTGCATCTT 4272 >seq13424 Length=49246 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| ||||| || || | ||| | || ||| Sbjct 197 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 138 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || || || ||||| ||| |||| | ||||||||||| Sbjct 137 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGG 78 Query 34893 ATCTTCTGTTTGACGGATGCTATCG-ATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| |||||| | |||| || | |||| || || || | || ||||| || Sbjct 77 ATCTTGGCCTTGACGTTCTCGATCGTATCCGACGGC-TCGACCTCCAGAGTGATGGTCTT 19 Query 34952 TCCCGTGAGAGTCTTCAC 34969 || || ||||||||||| Sbjct 18 GCCAGTCAGAGTCTTCAC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324576599107896