Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20No._204_20[genbank_20GCA_5F000956215.1_202015- 03-19] 14,407 sequences; 146,379,160 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq4722 104 2e-16 seq4721 104 2e-16 >seq4722 Length=14951 Score = 104 bits (114), Expect = 2e-16 Identities = 379/583 (65%), Gaps = 14/583 (2%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 ||||| ||| | || || || || || ||||| || || | || | || || |||||| Sbjct 2123 GGTATTGATCTGGGCACGACCTACAGCTGTGTCGGAGTGTTCCAGCACGGCAAGGTTGAA 2064 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 ||||||||||| || || |||||| | || || ||||| ||||| | ||||| || || Sbjct 2063 ATTATTGCCAACGACCAGGGTAACCGTACCACACCATCGTATGTGGCCTTCACTGACACC 2004 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTACCAATACT 550174 || | | |||| ||||| || || | || ||||| || || || ||||| || Sbjct 2003 GAGCGCCTGATTGGCGATGCCGCCAAGAACCAGGTAGCCA-TG--AACCCGACCAACACC 1947 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 || || || || || ||| | ||||| | | || | ||| | | | ||||| || Sbjct 1946 ATCTTCGACGCAAAGCGTCTGATTGGCCGTAAGTTCGACGATCCCGCCATCCAGGCTGAC 1887 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-CTAC 550293 |||||||| ||||| || | | | || || ||||| | || | | | | Sbjct 1886 ATGAAGCACTGGCCGTTTGAGGTGGAGTCGATTGAGGGCAAACCAAAGATCCAGGTCGAG 1827 Query 550294 TCATGAAGGATCTGTTAAA--CAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATG 550351 | |||| | | || | | ||| || || | | || ||||| || | Sbjct 1826 T--ACAAGGGTGAGAAGAAGTCGTTCTTC-CCGGAGGAGGTCAGCTCGATGGTGTTGACA 1770 Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTAATAAC 550410 || ||||| |||| ||| || | | ||| ||||| || || | || || || || Sbjct 1769 AAGATGAAGGAAACGGCCGAAGCCTAT-CTGGGCAAGACCGTGACCAACGCCGTCATCAC 1711 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 ||| || ||||| || || ||||| |||||||| || || || ||||| ||| || | Sbjct 1710 TGTGCCTGCATACTTCAACGACTCGCAACGTCAGGCGACGAAGGATGCCGGAACCATCTC 1651 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 ||| | || || || ||||| ||||| ||||| || || || || | || || || || Sbjct 1650 CGGATTGAACGTGCTGCGTATCATCAACGAACCGACAGCGGCCGCCATCGCGTACGGTCT 1591 Query 550531 TGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGAT 550573 || || | | | | |||| ||||| || ||||| ||| Sbjct 1590 GGACAAGAAGACAGCTGGCGAACGCAATGTGCTGATCTTCGAT 1548 >seq4721 Length=21953 Score = 104 bits (114), Expect = 2e-16 Identities = 379/583 (65%), Gaps = 14/583 (2%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 ||||| ||| | || || || || || ||||| || || | || | || || |||||| Sbjct 1818 GGTATTGATCTGGGCACGACCTACAGCTGTGTCGGAGTGTTCCAGCACGGCAAGGTTGAA 1877 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 ||||||||||| || || |||||| | || || ||||| ||||| | ||||| || || Sbjct 1878 ATTATTGCCAACGACCAGGGTAACCGTACCACACCATCGTATGTGGCCTTCACTGACACC 1937 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTACCAATACT 550174 || | | |||| ||||| || || | || ||||| || || || ||||| || Sbjct 1938 GAGCGCCTGATTGGCGATGCCGCCAAGAACCAGGTAGCCA-TG--AACCCGACCAACACC 1994 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 || || || || || ||| | ||||| | | || | ||| | | | ||||| || Sbjct 1995 ATCTTCGACGCAAAGCGTCTGATTGGCCGTAAGTTCGACGATCCCGCCATCCAGGCTGAC 2054 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-CTAC 550293 |||||||| ||||| || | | | || || ||||| | || | | | | Sbjct 2055 ATGAAGCACTGGCCGTTTGAGGTGGAGTCGATTGAGGGCAAACCAAAGATCCAGGTCGAG 2114 Query 550294 TCATGAAGGATCTGTTAAA--CAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATG 550351 | |||| | | || | | ||| || || | | || ||||| || | Sbjct 2115 T--ACAAGGGTGAGAAGAAGTCGTTCTTC-CCGGAGGAGGTCAGCTCGATGGTGTTGACA 2171 Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTAATAAC 550410 || ||||| |||| ||| || | | ||| ||||| || || | || || || || Sbjct 2172 AAGATGAAGGAAACGGCCGAAGCCTAT-CTGGGCAAGACCGTGACCAACGCCGTCATCAC 2230 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 ||| || ||||| || || ||||| |||||||| || || || ||||| ||| || | Sbjct 2231 TGTGCCTGCATACTTCAACGACTCGCAACGTCAGGCGACGAAGGATGCCGGAACCATCTC 2290 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 ||| | || || || ||||| ||||| ||||| || || || || | || || || || Sbjct 2291 CGGATTGAACGTGCTGCGTATCATCAACGAACCGACAGCGGCCGCCATCGCGTACGGTCT 2350 Query 550531 TGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGAT 550573 || || | | | | |||| ||||| || ||||| ||| Sbjct 2351 GGACAAGAAGACAGCTGGCGAACGCAATGTGCTGATCTTCGAT 2393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028534092864430