Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20No._204_20[genbank_20GCA_5F000956215.1_202015- 03-19] 14,407 sequences; 146,379,160 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq3338 145 6e-30 seq6044 95.1 9e-15 seq5453 84.2 2e-11 seq633 82.4 6e-11 >seq3338 Length=23718 Score = 145 bits (160), Expect = 6e-30 Identities = 217/308 (70%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 8995 TTAGTACCGGTTGACCCAAACCCTCCCTCTCCGCGATTGGTGTCAGTCGTGGAAGTAACC 9054 || || || || || ||||| ||||| | || |||| ||||| ||| || | | | Sbjct 20534 TTTGTGCCTGTCGATCCAAATCCTCCTGCGCCACGATCCGTGTCCGTCAGTGACGGTAGC 20593 Query 9055 TCTACCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTA 9114 ||| ||| ||||| || | ||| || || ||||| ||||| | || ||||| Sbjct 20594 TCTTCCAAGTCCGGATAGGCTATCTTTTCGCAGATGAATTGCGCAATACGATCACCCTTC 20653 Query 9115 TTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAA 9174 ||||| | || || |||||||| ||||||||||| || || ||||| |||| ||| Sbjct 20654 TTCACCTCGAAATCCACTTCGGAATGGTTGAACAGCACAACACCAACGTTTCCCCGGTAG 20713 Query 9175 TCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGG 9234 ||||| || | || || || ||||| |||||||||| || ||||| || || ||||| Sbjct 20714 TCCTCGTCAACGACGCCTGCCCCCACATCGATGAAGTTTTTCACCGCCAGCCCGGAGCGT 20773 Query 9235 GGCGCGATTCGACCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATGACCAGC 9294 || || | || ||||| || || |||||| |||||| | | ||| ||||| || ||| Sbjct 20774 GGTGCTACACGTCCGTAACAGCCTTCCGGTACCTGCACCTGGATGTCAGTCATTACGAGC 20833 Query 9295 CCCTTGCC 9302 ||| || Sbjct 20834 TGCTTACC 20841 >seq6044 Length=6192 Score = 95.1 bits (104), Expect = 9e-15 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| ||| || || ||| || || ||||||||||| || || | || Sbjct 4492 AGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGACAGGGTGCGG 4433 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || || || ||||| ||||||| || | |||||| Sbjct 4432 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATACCCTCC 4373 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| ||||| | ||| Sbjct 4372 TTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTA 4313 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || ||||| | ||||| || || ||||||||| || Sbjct 4312 ATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTG 4271 >seq5453 Length=57727 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || || ||||| || || ||| | || |||| |||| |||||| ||||| || Sbjct 57727 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAG 57668 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 ||||| ||||| ||||| | || | ||||||||||| ||||| || || Sbjct 57667 ATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTC 57608 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || |||| ||| ||||||| || || || || || |||| ||| || || Sbjct 57607 TCGATCGTATCCGACGGCTCGACCTCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCACG 57548 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 57547 AAGATCTGCAT 57537 >seq633 Length=15238 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || |||| |||||| ||||| || ||||| ||||| ||||| | || | ||| ||||| Sbjct 4 TCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGAGGGATGCCTTCCTTA 63 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || |||||| || || | | | || || | ||||||||||| ||| || Sbjct 64 TCCTGAATCTTAGCCTTCACGTTCTCGATGGTGTCCGATGGCTCCACCTCCAGCGTGATG 123 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| |||| ||| || || ||||||||||| Sbjct 124 GTCTTTCCGGTCAGAGTCTTGACGAAAATCTGCAT 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380870712952461