Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20No._204_20[genbank_20GCA_5F000956215.1_202015- 03-19] 14,407 sequences; 146,379,160 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq8951 233 4e-56 seq13085 109 1e-18 >seq8951 Length=23152 Score = 233 bits (258), Expect = 4e-56 Identities = 475/705 (67%), Gaps = 3/705 (0%) Strand=Plus/Plus Query 47953 CAGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTAT 48012 ||||| ||||||| ||| |||| ||||| | ||||| || | ||||||||| | Sbjct 2270 CAGCAACCGATCCGCCACGAACTCAATGTACTGCGACATCAGTTCGCAGTTCATGCCGAG 2329 Query 48013 GAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072 | | || |||| ||||| || || || |||| || ||| || || || | | Sbjct 2330 CATGTCGACTGGCAGTGCCTTGGTCAGGAATTCCTGTTCGATCACGACCGCATCGCGAAT 2389 Query 48073 AATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCA 48132 |||| | | ||||| || || || || | ||| | | | | | || ||| Sbjct 2390 GATCTCCGTTACGCGCTCCTTCGACGGCTTCTGCACCAGATACCGGA---ACATCAGGCA 2446 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 ||||||||| | ||||| || ||||| || ||| ||| |||| ||||| || || Sbjct 2447 GGCAAAGTCACAGTGCAGTCCCTCGTCGCGCGAGATCAGCTCGTTCGAGAACGTCAGCCC 2506 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 ||||| | || | || || ||||||||||| ||||| || |||| ||||||||| Sbjct 2507 TGGCATTAGGCCGCGCTTCTTCAGCCAGAAAATAGCCGCAAAGCTGCCACTGAAGAAGAT 2566 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGAT 48312 |||||| || || |||||||| | | || || || || |||||| ||||| Sbjct 2567 GCCCTCAACAGCAGCGAACGCAACCACACGTTCCCCAAAGTTGGCCTTCTTGCTGGAGAT 2626 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA 48372 |||| ||||||||||| ||||||||||| | ||| |||| ||| || || || ||| Sbjct 2627 CCAGTTCAGCGCCCAGTCGGCCTTCTTCTTTACGCACGGCAGCGTTTCGATCGCGTTGAA 2686 Query 48373 GAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTC 48432 || | || | ||| | ||| | || || || |||| | |||||| || Sbjct 2687 CAGATACTCCCGCTCCTTCGGGTCGCGTATGTACGTGTCGATCAGCAGCGAGTACATTTC 2746 Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492 ||||| ||||| || || ||||| |||||||||||| | |||||| |||||| Sbjct 2747 GCTATGCACGTTCTCCATCGCAATCTGAAACCCGTAGAAGCAGCGGGCCTCCGTCACCTG 2806 Query 48493 CACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAA 48552 ||| || | ||| | ||||| ||||||||| || || || || || || || || || Sbjct 2807 CACCTCCTGGCTGAAGCGCTCCACCAGATTCTCGTTTACGATACCGTCCGAGGCGGCGAA 2866 Query 48553 GAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTG 48612 ||||||||| || || | ||| || |||||| | |||| | | ||| | | Sbjct 2867 GAAGGCAAGTACGTGCGAGATGAAGTGACGCTCGCTCGACTTGAGCGATTCCCAATCTTT 2926 Query 48613 TACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 | ||| || |||||||| |||||||| ||||||||||| || Sbjct 2927 CATGTCCTTCGATAGGTCCACCTCTTCCACTGTCCAGAAGGAAGC 2971 >seq13085 Length=52099 Score = 109 bits (120), Expect = 1e-18 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 241489 CTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCA 241548 ||| ||| ||||||| || ||||||||| || ||| ||||| || || ||||| ||||| Sbjct 3689 CTTCAGCTCCTTCACCTTGTCCTCCAGCTTCGAGATCCGTTCGAGCTTCCGCCGCCGGCA 3630 Query 241549 TTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTC 241608 |||| ||| |||| || || || || | ||| ||||| ||||||||| ||||| Sbjct 3629 CTTGGAGGCAGCCACCCGATTTCGCAGCCGCTTCCGTTCGAGCTTGATGCGCTCCTGTGA 3570 Query 241609 CTCCATGTCGATCGG 241623 ||||||||||||||| Sbjct 3569 CTCCATGTCGATCGG 3555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931365042586880