Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20No._204_20[genbank_20GCA_5F000956215.1_202015- 03-19] 14,407 sequences; 146,379,160 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3933 98.7 3e-15 seq3505 95.1 4e-14 >seq3933 Length=36379 Score = 98.7 bits (108), Expect = 3e-15 Identities = 169/243 (70%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| |||||| ||||||||||| || ||||| ||| | || || || || ||| Sbjct 16076 TCCATAGCCTTGATCAAACGACGCTGGATGTAACCGGTTTCGGCCGTCTTGACGGCGGTA 16017 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693 || || | ||| | ||||| ||||| || |||||| | | |||| ||| ||| || || Sbjct 16016 TCGATCAAACCCTCGCGACCGCCCATTGCGTGGAAGTAGAACTCTGTCGG-CGTCAGACC 15958 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAA 302753 | | ||||| | || ||||| ||||||| || || | |||| ||| | || Sbjct 15957 AGCCAGGTAGGAGTTTTCCACGAACCCACGCGATTCAGGACCGTAGTCGTCTTTGATGAA 15898 Query 302754 GTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTG 302813 || |||| ||| | || | ||| | ||||| ||||| || || ||||||||||| Sbjct 15897 ATGGGGCAAGGTGCGCTTGCGGAACCCGAACGGGATGCGCTTACCCTCCACGTTCTGCTG 15838 Query 302814 TCC 302816 || Sbjct 15837 ACC 15835 >seq3505 Length=28826 Score = 95.1 bits (104), Expect = 4e-14 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||| |||||| ||||||||||||||| || |||||||| | ||||| || || Sbjct 19012 GCACCGTGCGAAATCTGACAATCACGCTCCATCTCGCCGAAACGCAAGCCACCGTCACGC 18953 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604 || | |||||| || || ||| |||| | || |||||| || || ||| Sbjct 18952 GCACGACCCTCCATCGGTTGGCGAACGAGAATCTGCACGGGACCGCGGGCACGCGAATGG 18893 Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGA 251659 |||||| | ||||| || || | |||||||||| | | |||||||| |||| Sbjct 18892 ATCTTATCGTCCACCATGTGTTTCAAACGCTGGTAGTAGGTGGGACCGAGAAAGA 18838 Score = 87.8 bits (96), Expect = 5e-12 Identities = 148/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 ||| |||| |||||||| ||||| || || || |||||||||||||||||| | | Sbjct 18655 TGGCCGATGGTCATACGCGACGGAATGGCGTGCGGGTTGATGATGATGTCGGGTGTGATA 18596 Query 251899 CCATCAGCA-GTGAAGGGCATATCCTTTTCCTCAATAATGTTTCCAATA-GTTCCCTTTT 251956 || || ||| ||||| |||||||||| | | | || || ||| | || ||||| | Sbjct 18595 CCTTC-GCACGTGAACGGCATATCCTCCTGC-CGGTACTGAATCCCGCACGTACCCTTCT 18538 Query 251957 GTCCGTGACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAA 252016 |||||||||| ||| ||||| || || || ||| || || || | ||| | Sbjct 18537 GTCCGTGACGTGAAGCAAACTTGTCGCCGATTTGCGGAATACGCACCGAGCGCACGCGGA 18478 Query 252017 CCTTACAGAAGTTGTAACCATCACCGTTG 252045 ||| ||||| ||||| || |||| |||| Sbjct 18477 TCTTGCAGAACTTGTAGCCCTCACTGTTG 18449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471545917649159