Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20No._204_20[genbank_20GCA_5F000956215.1_202015- 03-19] 14,407 sequences; 146,379,160 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq8951 114 2e-19 seq6147 111 2e-18 >seq8951 Length=23152 Score = 114 bits (126), Expect = 2e-19 Identities = 196/281 (70%), Gaps = 9/281 (3%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || |||||||| ||||| ||||| || | || || ||||| |||||||||||| Sbjct 2466 CCCTCGTCGCGCGAGATCAGCTCGTTCGAGAACGTCAGCCCTGGCATTAGGCCGCGCTTC 2525 Query 869240 TTGAGCCAAAAGAT-GGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 || ||||| || || | |||| || ||||| ||| ||||||||||| || || || || Sbjct 2526 TTCAGCCAGAAAATAGCCGCA-AAGCTGCCACTGAAGAAGATGCCCTCAACAGCAGCGAA 2584 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCT--TGTTGATCCACTTCATCGCC 869356 | | | || || ||||| | |||| || | || |||||| |||| |||| Sbjct 2585 CGCAACCACACGTTCCCCAAAGTT-----GGCCTTCTTGCTGGAGATCCAGTTCAGCGCC 2639 Query 869357 CAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTT 869416 ||||||||||| ||| | || |||||| ||| ||||| ||| || || | ||| Sbjct 2640 CAGTCGGCCTTCTTCTTTACGCACGGCAGCGTTTCGATCGCGTTGAACAGATACTCCCGC 2699 Query 869417 TCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATA 869457 || |||||| | || ||||||||||| ||||| || Sbjct 2700 TCCTTCGGGTCGCGTATGTACGTGTCGATCAGCAGCGAGTA 2740 Score = 91.5 bits (100), Expect = 2e-12 Identities = 159/226 (70%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 869641 GTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGACCTCCTT 869700 |||||| || || ||||| || ||||| ||| | |||| | ||| || ||||||| Sbjct 2756 GTTCTCCATCGCAATCTGAAACCCGTAGAAGCAGCGGGCCTCCGTCACCTGCACCTCCTG 2815 Query 869701 CATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAAAGCCAG 869760 |||| || | |||| |||||| ||||| ||||| ||||||||| || || || Sbjct 2816 GCTGAAGCGCTCCACCAGATTCTCGTTTACGATACCGTCCGAGGCGGCGAAGAAGGCAAG 2875 Query 869761 GACGTGCTTGATAAAGTGGCGCTCG-TCGTCGCTGAGCGACACCCAGTGGACGGTGTCGG 869819 |||||| ||| ||||| |||||| ||| | ||||||| |||| | |||| Sbjct 2876 TACGTGCGAGATGAAGTGACGCTCGCTCGACT-TGAGCGATTCCCAATCTTTCATGTCCT 2934 Query 869820 -CGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCT 869864 || | ||||||||||| || | ||||||| || || || |||| Sbjct 2935 TCGAT-AGGTCCACCTCTTCCACTGTCCAGAAGGAAGCTTCCGCCT 2979 >seq6147 Length=207783 Score = 111 bits (122), Expect = 2e-18 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | || || ||||| ||||| || ||||| | || Sbjct 204607 GCTTGGCCAGCTCACCCGGCAGCAGCAACCGGACGGCCGTCTGAATTTCGCGGGACGTGA 204666 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| ||||||||| |||||||||| || ||||||| |||| || |||| | Sbjct 204667 TCGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGAAGCCTCGGCCGCGATACGCTCGAAGA 204726 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||| ||||| ||| || ||||| ||| |||| Sbjct 204727 TGTCGTTCACGAAGCTGTTCATGATGCTCATCGCCTTCGACGAAATGCCGGTGTCCGGGT 204786 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| || |||||||||||| Sbjct 204787 GGACCTGCTTCAGGACCTTGTAGATG 204812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105956894112019