Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20No._204_20[genbank_20GCA_5F000956215.1_202015- 03-19] 14,407 sequences; 146,379,160 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq8295 127 2e-24 seq6044 123 2e-23 seq13424 93.3 4e-14 seq5453 86.0 6e-12 >seq8295 Length=14778 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||| || | ||||| || ||||| || || || || || || || || | Sbjct 5146 ACCATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACTCTTGAGGTCGAGCCT 5087 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | |||| || || |||||||| ||||| || ||||| ||||| ||| Sbjct 5086 TCGGACACGATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCGGAT 5027 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || ||| ||||||| ||||| ||||||||||| ||| | | |||| || || Sbjct 5026 CAGCAGCGTCTGATCTTCGCCGGCAAACAGCTGGAAGATGGCCGCACTCTGTCGGACTAC 4967 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || |||||||| || || ||| ||||| | ||| | || || || Sbjct 4966 AACATCCAGAAGGAATCCACCCTTCACCTGGTGCTCCGACTCCGTGGTGG 4917 >seq6044 Length=6192 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | ||||| || || ||||| || ||||| || || || || || | Sbjct 4274 GATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTC 4333 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | || || |||||||| ||||| || || || || || ||||| Sbjct 4334 GGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGTATCCCGCCGGATCA 4393 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | ||||| ||||| || |||||||||||| | | | |||| ||||| || Sbjct 4394 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGATTACAA 4453 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || || ||||| | || ||||||| || Sbjct 4454 TATCCAGAAGGAGTCGACCCTTCATCTGGTGCTTCGCCTGCGCGGTGG 4501 >seq13424 Length=49246 Score = 93.3 bits (102), Expect = 4e-14 Identities = 110/146 (75%), Gaps = 6/146 (4%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| || ||||| || || ||||| || ||| ||||||| ||||| || Sbjct 73 AAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAG 132 Query 24848 CAGCTGGAGGATTCGAGAAACA---TGTCAGATTATAACATTCAAAAGGAATCGACACTA 24904 ||||||||||| || || || |||| || || ||||| || ||||| ||||| | Sbjct 133 CAGCTGGAGGA--CG-GACGCACTCTGTCCGACTACAACATCCAGAAGGAGTCGACCTTG 189 Query 24905 CACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||| | || | ||||| || Sbjct 190 CACTTGGTCCTCCGGCTTCGCGGTGG 215 >seq5453 Length=57727 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || | | Sbjct 57537 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCGTCG 57596 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||||| || ||||| || || ||||| Sbjct 57597 GATACGATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAG 57656 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA---TGTCAGATTAT 24880 || ||| ||||||| ||||| || ||||||||||| || || || |||| || || Sbjct 57657 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGA--CG-GACGCACTCTGTCCGACTAC 57713 Query 24881 AACATTCAAAAGGA 24894 ||||| || ||||| Sbjct 57714 AACATCCAGAAGGA 57727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449816579065960