Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20No._204_20[genbank_20GCA_5F000956215.1_202015- 03-19] 14,407 sequences; 146,379,160 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq6147 150 3e-30 seq8951 118 2e-20 seq3933 86.0 1e-10 seq3505 86.0 1e-10 >seq6147 Length=207783 Score = 150 bits (166), Expect = 3e-30 Identities = 178/241 (74%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || ||||||||||| ||||| || ||||||||| ||||||| || || ||| Sbjct 204568 TGTACTTCGTCACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCACCCGGCA 204627 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || ||||| ||||| || ||||||| |||||| ||||||||| | Sbjct 204628 GCAGCAACCGGACGGCCGTCTGAATTTCGCGGGACGTGATCGTCGAGCGCTTGTTGTAGT 204687 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| |||| || |||| |||||||| || || ||||| Sbjct 204688 GCGCCAGGCGCGAAGCCTCGGCCGCGATACGCTCGAAGATGTCGTTCACGAAGCTGTTCA 204747 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| || || ||||| ||| ||||| |||||||| || ||||||| Sbjct 204748 TGATGCTCATCGCCTTCGACGAAATGCCGGTGTCCGGGTGGACCTGCTTCAGGACCTTGT 204807 Query 1485710 A 1485710 | Sbjct 204808 A 204808 >seq8951 Length=23152 Score = 118 bits (130), Expect = 2e-20 Identities = 225/329 (68%), Gaps = 7/329 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || |||||||| ||||| ||||| || || || ||||| |||||||||||| Sbjct 2466 CCCTCGTCGCGCGAGATCAGCTCGTTCGAGAACGTCAGCCCTGGCATTAGGCCGCGCTTC 2525 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| || || || || ||||| ||| ||||||||||| || || || || Sbjct 2526 TTCAGCCAGAAAATAGCCGCAAAGCTGCCACTGAAGAAGATGCCCTCAACAGCAGCGAAC 2585 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTT--TGTTGATCCACTTCATCGCCC 794518 | || | || || | ||||| |||| |||| || |||||| |||| ||||| Sbjct 2586 GCAACCACACGTTC-CCCAAAGT----TGGCCTTCTTGCTGGAGATCCAGTTCAGCGCCC 2640 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 | || ||||| ||| | || | |||| ||| ||||| ||| || || | ||| || Sbjct 2641 AGTCGGCCTTCTTCTTTACGCACGGCAGCGTTTCGATCGCGTTGAACAGATACTCCCGCT 2700 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 | |||||| | ||| |||||||| || |||||||| | || || | ||| | Sbjct 2701 CCTTCGGGTCGCGTATGTACGTGTCGATCAGCAGCGAGTACATTTCGCTATGCACGTTCT 2760 Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCAG 794667 | || || ||||| || || || |||||| Sbjct 2761 CCATCGCAATCTGAAACCCGTAGAAGCAG 2789 Score = 89.7 bits (98), Expect = 8e-12 Identities = 142/199 (71%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200 || || | |||||| | || || ||||||| ||||||| | |||| ||||| Sbjct 2784 AAGCAGCGGGCCTCCGTCACCTGCACCTCCTGGCTGAAGCGCTCCACCAGATTCTCGTTT 2843 Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCG-TC 796259 ||||| ||||| ||||||||| ||||| || |||||| ||| |||||||||||| || Sbjct 2844 ACGATACCGTCCGAGGCGGCGAAGAAGGCAAGTACGTGCGAGATGAAGTGACGCTCGCTC 2903 Query 796260 GTCGCTGAGCGAGACCCAGTGGACCGTGTCGGCGCCG--AGGTCGACCTCCTCGGCGGTC 796317 | | ||||||| |||| | | |||| | || ||||| ||||| || | ||| Sbjct 2904 GAC-TTGAGCGATTCCCAATCTTTCATGTC--CTTCGATAGGTCCACCTCTTCCACTGTC 2960 Query 796318 CAAAAGGAGGCCTCGGCCT 796336 || ||||| || || |||| Sbjct 2961 CAGAAGGAAGCTTCCGCCT 2979 >seq3933 Length=36379 Score = 86.0 bits (94), Expect = 1e-10 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 431094 ATCGGCGGGCGCGAGGGTCTCGTCGACACGGCCGTCAAGACGGCCGAGACGGGCTACATC 431153 || ||||| ||||||||| | |||| || ||||||||||||||||| || || |||||| Sbjct 15991 ATGGGCGGTCGCGAGGGTTTGATCGATACCGCCGTCAAGACGGCCGAAACCGGTTACATC 16050 Query 431154 CAGCGTCGGTGCATCAAATCGATGGAG 431180 |||||||| | ||||| | |||||| Sbjct 16051 CAGCGTCGTTTGATCAAGGCTATGGAG 16077 >seq3505 Length=28826 Score = 86.0 bits (94), Expect = 1e-10 Identities = 93/121 (77%), Gaps = 3/121 (2%) Strand=Plus/Plus Query 653717 GAGGAAATGCCGTGGTCGCCGCGCGGGGGCGCCACGCCCGACATCGTCATCAACCCGCAC 653776 ||||| ||||||| || | | ||| || ||| ||||||||| |||||||||||||| Sbjct 18570 GAGGATATGCCGT--TCAC-GTGCGAAGGTATCACACCCGACATCATCATCAACCCGCAC 18626 Query 653777 GCCATCCCGTCGCGCATGACCATGGGCAAGATGATGGAGGCCCTCCTGGGCAAGGTGGCC 653836 ||||| |||||||| |||||||| ||| | |||| ||| | | | ||| ||| ||| | Sbjct 18627 GCCATTCCGTCGCGTATGACCATCGGCCATTTGATCGAGTGCATTCAGGGAAAGCTGGGC 18686 Query 653837 T 653837 | Sbjct 18687 T 18687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914713861699673