Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20No._204_20[genbank_20GCA_5F000956215.1_202015- 03-19] 14,407 sequences; 146,379,160 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq8295 122 7e-23 seq6044 105 5e-18 >seq8295 Length=14778 Score = 122 bits (134), Expect = 7e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||| ||||| |||||||| || || ||||| || |||| | ||||| | Sbjct 4929 CGGAGCACCAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCA 4988 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || |||||||| || | |||| | ||||||||||| || || ||||| ||| Sbjct 4989 TCTTCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATTCCCTCCTTG 5048 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || ||| |||| | ||||| ||| | || || |||||||| || Sbjct 5049 TCCTGGATCTTGGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGAGTGATG 5108 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | ||||| || || |||||||| Sbjct 5109 GTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 5143 >seq6044 Length=6192 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||| |||||| || || || || || || || ||||| | | |||||| | Sbjct 4489 CGAAGCACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGACAGGGTGCGGCCA 4430 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || ||||| || | || | | |||||||||||||| |||||||| ||| Sbjct 4429 TCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATACCCTCCTTG 4370 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || ||| | || | || || || | || || ||||| || || Sbjct 4369 TCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATG 4310 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAACGTATG 29799 || || || || | |||||| || || |||||||| || || ||| || Sbjct 4309 GTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTGAACCGTCTG 4262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385151561166387