Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20No._204_20[genbank_20GCA_5F000956215.1_202015- 03-19] 14,407 sequences; 146,379,160 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq8951 185 8e-42 seq6044 132 5e-26 seq8295 122 8e-23 seq5453 120 3e-22 seq633 116 4e-21 seq13424 111 2e-19 seq14285 96.9 3e-15 >seq8951 Length=23152 Score = 185 bits (204), Expect = 8e-42 Identities = 378/547 (69%), Gaps = 11/547 (2%) Strand=Plus/Plus Query 120639 CAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGT 120698 |||||| |||||||| |||||| |||||||||||||| ||||||||||| ||||| Sbjct 2441 CAGGCAGGCAAAGTCACAGTGCAGTCCCTCGTCGCGCGAGATCAGCTCGTTCGAGAACGT 2500 Query 120699 CAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAA 120758 ||| || ||||| | ||| | |||| | |||| || || ||||||||||| || Sbjct 2501 CAGCCCTGGCATTAGGCCGCGCTTCTTCAGCCAGAAAATAGCCGCAAAGCTGCCACTGAA 2560 Query 120759 GAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCT 120818 ||| | |||||| || || || || |||| || || | || | ||| ||||||| Sbjct 2561 GAAGATGCCCTCAACAGCAGCGAACGCAACCACACGTTCCCCAAAGTTGGCCTTCTTGCT 2620 Query 120819 GTCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGC 120878 | |||||| |||| ||||| |||||||| || |||||||||| | |||| ||| Sbjct 2621 GGAGATCCAGTTCAGCGCCCAGTCGGCCTTCTTCTTTACGCACGGCAGCGTTTCGATCGC 2680 Query 120879 GTTCAGCAGCATGTCGCGCTCGCCCTCCTC-CGCAATCAGCTGATGGATGAGCAGATTGT 120937 ||| | ||| || ||||| | || || | | || | ||| ||||| || Sbjct 2681 GTTGAACAGATACTCCCGCTCCTTCGGGTCGCGTATGTACGTG-TCGATCAGCAGCGAGT 2739 Query 120938 ACATTTCCGTGTGCACGCACTCGATCAGCACT-TGCTGGTTGTAAAAGTACTGCGCCTCC 120996 ||||||| | |||||| ||| ||| ||| | || ||| ||| | | |||||| Sbjct 2740 ACATTTCGCTATGCACGTTCTCCATC-GCAATCTGAAACCCGTAGAAGCAGCGGGCCTCC 2798 Query 120997 AGCTCGGGCACCGCC-CGCTGCATGTACTCGATAAGGTTAATATTCACGATACTGTCGGC 121055 | | ||||| || |||| | | ||| | || || || ||||||| ||| | Sbjct 2799 GTCACCTGCACCTCCTGGCTG-AAGCGCTCCACCAGATTCTCGTTTACGATACCGTCCGA 2857 Query 121056 GGCGGCGAAGAACGCCAGCACGTGCTTGATAAAGTGTCGCTCG-TCGTCCGTGAGCTTGT 121114 |||||||||||| || || |||||| ||| ||||| |||||| ||| | ||||| | Sbjct 2858 GGCGGCGAAGAAGGCAAGTACGTGCGAGATGAAGTGACGCTCGCTCG-ACTTGAGC-GAT 2915 Query 121115 GCGCAAAATCGTCATAGTCCTTGGACAGGTCGACCTCCTCCACCTTCCACATGCAATCGA 121174 | ||| | |||| |||||| || ||||| ||||| ||||| |||| | | || | Sbjct 2916 TCCCAATCT-TTCAT-GTCCTTCGATAGGTCCACCTCTTCCACTGTCCAGAAGGAAGCTT 2973 Query 121175 GCGCCTG 121181 |||||| Sbjct 2974 CCGCCTG 2980 >seq6044 Length=6192 Score = 132 bits (146), Expect = 5e-26 Identities = 154/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| |||||||||||| || ||| | | | ||||| |||| Sbjct 4478 ATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGACAGGGTGCGGCCA-TCCTCCAGCT 4420 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | ||||| |||||||| || || ||||| || |||||||| ||||| Sbjct 4419 GCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCCTGGATCT 4360 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||| | ||| || | |||||| || || | ||| | ||| || || | Sbjct 4359 TCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTTACCCG 4300 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || ||||| ||||| |||||||| Sbjct 4299 TGAGGGTTTTGACGAAGATCTGCAT 4275 >seq8295 Length=14778 Score = 122 bits (134), Expect = 8e-23 Identities = 149/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| || ||||| || ||||| || || ||| | | | || || ||||| |||| Sbjct 4946 GGTGGATTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCA-TCTTCCAGCTGTTTGC 5004 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || || |||||||| || |||||||| || |||||||| |||||| || Sbjct 5005 CGGCGAAGATCAGACGCTGCTGATCCGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCT 5064 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | |||||| | ||||| || || | |||| ||| |||||||| || | Sbjct 5065 TCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGTG 5124 Query 133642 TTTTTACGAAAATCTGCATGG 133662 |||| |||||||||||||||| Sbjct 5125 TTTTCACGAAAATCTGCATGG 5145 >seq5453 Length=57727 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 133470 TCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTAA 133529 || ||||| || ||||| ||| || ||| |||||| ||||||||||| ||| | Sbjct 57727 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAG 57668 Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 || || |||||||| || || ||||| || |||||||| |||||| ||||| | | Sbjct 57667 ATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTC 57608 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 || | ||| || | ||||| || || | |||| ||| ||||| |||||||| || ||| Sbjct 57607 TCGATCGTATCCGACGGCTCGACCTCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCACG 57548 Query 133650 AAAATCTGCAT 133660 || |||||||| Sbjct 57547 AAGATCTGCAT 57537 >seq633 Length=15238 Score = 116 bits (128), Expect = 4e-21 Identities = 123/161 (76%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || |||||||| || ||| | || || |||||||| || ||||||||||||||||| Sbjct 4 TCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGAGGGATGCCTTCCTTA 63 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||| ||| | | ||| | ||||| | |||||||| || | |||| | Sbjct 64 TCCTGAATCTTAGCCTTCACGTTCTCGATGGTGTCCGATGGCTCCACCTCCAGCGTGATG 123 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGGCTTA 133666 || || ||||||||||| || |||||||||||||| ||||| Sbjct 124 GTCTTTCCGGTCAGAGTCTTGACGAAAATCTGCAT-GCTTA 163 >seq13424 Length=49246 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| ||||| ||||| || ||||| ||| || ||| |||||| ||| Sbjct 194 AAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGC 135 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| | || || |||||||| || || ||||| || |||||||| |||| Sbjct 134 TGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATC 75 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | ||| | ||| || | ||||| || || | |||| ||| ||||| Sbjct 74 TTGGCCTTGACGTTCTCGATCGTATCCGACGGCTCGACCTCCAGAGTGATGGTCTTGCCA 15 Query 133635 GTCAGAGTTTTTAC 133648 |||||||| || || Sbjct 14 GTCAGAGTCTTCAC 1 >seq14285 Length=18903 Score = 96.9 bits (106), Expect = 3e-15 Identities = 129/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| |||||||| || || || | | | || || |||||||| || Sbjct 176 GTGGACTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCA-TCTTCCAGCTGCTTTCC 118 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || |||||||| || ||||||||||||||||| || ||||| ||| Sbjct 117 GGCGAAGATCAGACGCTGCTGATCTGGAGGGATGCCTTCCTTATCCTGAATCTTAGCCTT 58 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAG 133639 | | ||| | ||||| | |||||||| || | |||| ||| || |||||||| Sbjct 57 CACGTTCTCGATGGTGTCCGATGGCTCCACCTCCAGCGTGATGGTCTTTCCGGTCAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483333741956680