Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20No._204_20[genbank_20GCA_5F000956215.1_202015- 03-19] 14,407 sequences; 146,379,160 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq8951 105 6e-18 seq633 100 3e-16 seq14285 91.5 1e-13 seq8295 82.4 7e-11 >seq8951 Length=23152 Score = 105 bits (116), Expect = 6e-18 Identities = 287/431 (67%), Gaps = 9/431 (2%) Strand=Plus/Minus Query 46743 AATGCGTTCGAGCACG-TGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGAT 46801 || ||| |||| ||| |||| ||||| || |||||| | ||||| |||| ||||| Sbjct 2683 AACGCGATCGAA-ACGCTGCCGTGCGTAAAGAAGAAGGCCGACTGGGCGCTGAACTGGAT 2625 Query 46802 CGAGAGCGAGACCGCCACGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGT 46861 | ||| ||| |||| | | || || |||| || ||||| || || ||| | Sbjct 2624 CTCCAGCAAGAAGGCCAACTTTGGGGAACGTGTGGTTGCGTTCGCTGCTGTTGAGGGCAT 2565 Query 46862 GtttttttCGGGCAGTTTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGG 46921 || || ||||| ||||| || ||||| | | || | ||| ||||||| || Sbjct 2564 CTTCTTCAGTGGCAGCTTTGCGGCTATTTTCTGGCTGAAGAAGCGCGGCCTAATGCCAGG 2505 Query 46922 CCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTG 46981 ||||||||| |||||| |||||||||||||||| ||||| ||| |||||||| || Sbjct 2504 GCTGACGTTCTCGAACGAGCTGATCTCGCGCGACGAGGGACTGCACTGTGACTTTGCCTG 2445 Query 46982 TCTCTATTACAAGACGCGCGTGAATGAGAAATTAAACTCGGA-CACGATCCTGAGCATGT 47040 || | | | | ||| | || | || ||| | || | ||| || Sbjct 2444 CCTGATGTTCCGGTATCTGGTGCAGAAGCCGTCGAA---GGAGCGCGTAACGGAG-ATCA 2389 Query 47041 TTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGC 47100 || | || ||||| |||||| |||| || | || ||| ||||| |||| | ||| Sbjct 2388 TTCGCGATGCGGTCGTGATCGAACAGGAATTCCTGACCAAGGCACTGCCAGTCGACATGC 2329 Query 47101 TGGGCATGAAC-GCACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTG 47159 | ||||||||| || | | |||| | || |||||||| ||||||||||| || || Sbjct 2328 TCGGCATGAACTGCGAACT-GATGTCGCAGTACATTGAGTTCGTGGCGGATCGGTTGCTG 2270 Query 47160 GTGCAGCTCGG 47170 || |||| || Sbjct 2269 CTGGAGCTGGG 2259 >seq633 Length=15238 Score = 100 bits (110), Expect = 3e-16 Identities = 120/162 (74%), Gaps = 1/162 (1%) Strand=Plus/Plus Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||| ||||| || |||| |||| |||||||| ||||||||||| |||||||| || Sbjct 3 ATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGAGGGATGCCTTCCTT 62 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 ||| ||| || |||| | || | || || | |||||||| || | ||| | Sbjct 63 ATCCTGAATCTTAGCCTTCACGTTCTCGATGGTGTCCGATGGCTCCACCTCCAGCGTGAT 122 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACTTA 132129 || || || |||||||| || | ||||||||||||| |||| Sbjct 123 GGTCTTTCCGGTCAGAGTCTTGACGAAAATCTGCATG-CTTA 163 >seq14285 Length=18903 Score = 91.5 bits (100), Expect = 1e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || || |||||||| || |||||| |||||| ||||| || |||| Sbjct 173 GACTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCATCTTCCAGCTGCTTTCCGGCG 114 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| ||||||||||| |||||||| ||||| ||| || |||| Sbjct 113 AAGATCAGACGCTGCTGATCTGGAGGGATGCCTTCCTTATCCTGAATCTTAGCCTTCACG 54 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAG 132102 | || | || || | |||||||| || | ||| | || || || ||||| Sbjct 53 TTCTCGATGGTGTCCGATGGCTCCACCTCCAGCGTGATGGTCTTTCCGGTCAG 1 >seq8295 Length=14778 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || || ||||||||||| || || || |||||| |||||||| |||| Sbjct 4950 GATTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCG 5009 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| ||||| ||||| || || || || || || || |||| Sbjct 5010 AAGATCAGACGCTGCTGATCCGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACA 5069 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | || || | ||||| || || | || | || || || || || ||||| Sbjct 5070 TTTTCGATCGTGTCCGAAGGCTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGTGTTTTC 5129 Query 132110 ATGAAAATCTGCATG 132124 | ||||||||||||| Sbjct 5130 ACGAAAATCTGCATG 5144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476525368280520