Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20No._204_20[genbank_20GCA_5F000956215.1_202015- 03-19] 14,407 sequences; 146,379,160 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq8951 199 6e-45 seq6147 122 1e-21 seq10702 89.7 7e-12 >seq8951 Length=23152 Score = 199 bits (220), Expect = 6e-45 Identities = 343/487 (70%), Gaps = 16/487 (3%) Strand=Plus/Minus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT--CGGCGCCGACACGGTCCA 1455853 |||| || || ||||| ||||| | || ||||| ||||| || | |||| | | Sbjct 2979 AGGCGGAAGCTTCCTTCTGGACAGTGGAAGAGGTGGACCTATCGAAG--GACATGAAAGA 2922 Query 1455854 CTGGGTGTCGCTGAGCGACGA-CGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTC 1455912 |||| ||||| | | ||| |||||| || |||||| |||||| || ||||| || | Sbjct 2921 TTGGGAATCGCTCAA-GTCGAGCGAGCGTCACTTCATCTCGCACGTACTTGCCTTCTT-C 2864 Query 1455913 GCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAA 1455972 |||||| || || ||||| |||||| |||| | ||||| | | ||||| || Sbjct 2863 GCCGCCTCGGACGGTATCGTAAACGAGAATCTGGTGGAGCGCTTCAGCCAGGAGGTGCAG 2804 Query 1455973 TTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAA 1456032 || | ||||| || | || |||||||| ||||| || || || ||| | || ||| Sbjct 2803 GTGACGGAGGCCCGCTGCTTCTACGGGTTTCAGATTGCGATGGAGAACGTGCATAGCGAA 2744 Query 1456033 ACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTT 1456092 | |||||||| ||||||||||| ||| | |||||| ||| ||| | || || Sbjct 2743 ATGTACTCGCTGCTGATCGACACGTACATACGCGACCCGAAGGAGCGGGAGTATCTGTTC 2684 Query 1456093 CGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATC 1456152 ||| ||||| ||| |||||| || | ||| ||||||||||||||| |||| |||||| Sbjct 2683 AACGCGATCGAAACGCTGCCGTGCGTAAAGAAGAAGGCCGACTGGGCGCTGAACTGGATC 2624 Query 1456153 AACA--AGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGG 1456209 || | || |||| |||||| || || | || | || || || || ||||| Sbjct 2623 TCCAGCAAGAAGGCC----AACTTTGGGGAACGTGTGGTTGCGTTCGCTGCTGTTGAGGG 2568 Query 1456210 CATCTTTTTCTCGGGCAGTTTCTGC-GCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGC 1456268 |||||| ||| ||||| || ||| || || || ||||| |||||||||||||| |||| Sbjct 2567 CATCTTCTTCAGTGGCAGCTT-TGCGGCTATTTTCTGGCTGAAGAAGCGCGGCCTAATGC 2509 Query 1456269 CCGGTCT 1456275 | || || Sbjct 2508 CAGGGCT 2502 >seq6147 Length=207783 Score = 122 bits (134), Expect = 1e-21 Identities = 167/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| || |||||||| ||||| |||| ||| || ||| | Sbjct 204811 ATCTACAAGGTCCTGAAGCAGGTCCACCCGGACACCGG-----CATT-TCGTCGAAGGCG 204758 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || || |||||||| |||| || |||| ||||||| Sbjct 204757 ATGAGCATCATGAACAGCTTCGTGAACGACATCTTCGAGCGTATCGCGGCCGAGGCTTCG 204698 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||||| || |||||||||| |||||| | ||||| || ||||| ||||| Sbjct 204697 CGCCTGGCGCACTACAACAAGCGCTCGACGATCACGTCCCGCGAAATTCAGACGGCCGTC 204638 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || | ||| || || ||||||| ||||||||| ||||||||||||| Sbjct 204637 CGGTTGCTGCTGCCGGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 204586 >seq10702 Length=26310 Score = 89.7 bits (98), Expect = 7e-12 Identities = 229/346 (66%), Gaps = 2/346 (1%) Strand=Plus/Plus Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAG 332932 || ||||| || ||||| || ||| | | ||||||| | || ||||| || Sbjct 11626 AAACGCAGCATCGCACACCGCGACTGTATTGGTTCGATGATCTTTTCGCTAGTGTTACAT 11685 Query 332933 GCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGG 332992 |||| ||||| || || || ||| | | ||||||| || || || ||||| || Sbjct 11686 GCCAACGCAAAGCGTGTTGTGTTGCTGTAGATTTCCATTGTGCGGCGTAGCGCCTGCTGA 11745 Query 332993 GCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGC 333052 || | ||| | || ||| ||||||||||| || | ||||||||| |||||| | ||| Sbjct 11746 GCACCTTCCGTCATGCTGTCCGCCTCGTCGAGAATTACGATCTTGTGACGCCCGCGTGGC 11805 Query 333053 AGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGCGC 333112 || ||| | | | ||| |||||| | | || || || || | || ||| Sbjct 11806 AGCGTTACCTTCTGCTGGGCAAACATTTTGATCTTACTACGTACCACATCGATACCACGC 11865 Query 333113 TCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCG-GCGGCCGCACCCAAGAGGACGCG 333171 |||| || || || || || ||||||||||| ||| | || ||| | |||| ||| Sbjct 11866 TCGTTTGAGGCATTCAGCTCAAGCACGGCCTC-TCGAAAGTTCGGACCGAGCAGGATGCG 11924 Query 333172 CGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCC 333217 ||||| || ||| |||| || || ||| || || |||||| Sbjct 11925 GGCCAGACAAAGGATAGTCGTAGTTTTACCCACTCCCGGTGGACCC 11970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176421618369934