Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20No._204_20[genbank_20GCA_5F000956215.1_202015- 03-19] 14,407 sequences; 146,379,160 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq14080 129 5e-25 seq5453 107 2e-18 seq13424 100 3e-16 seq6044 100 3e-16 seq3338 87.8 2e-12 >seq14080 Length=20585 Score = 129 bits (142), Expect = 5e-25 Identities = 223/319 (70%), Gaps = 4/319 (1%) Strand=Plus/Plus Query 44103 CTAGAGACGGCCTCCACCCATGATCCTTTGTGGAACGCTGCCCAAACACAACTGTTGCGA 44162 || || || ||| |||||| ||| |||||||||| ||||| || || || Sbjct 7574 CTGGAAACAGCCCACACCCACGATGACCTGTGGAACGCAGCCCAGCTGCAGCTAGTGAAG 7633 Query 44163 GAAGGTAAAATGCACCAATACATGCGTATGTATTGGTGCAAGAAGATATTGGAGTGGTCG 44222 || | || |||||| | | |||| ||||||||| ||||| ||| | |||||| || Sbjct 7634 GAGGCCAAGATGCACGGGTTCCTGCGCATGTATTGGGCGAAGAAAATACTAGAGTGGACG 7693 Query 44223 GAAGATGCGCAAACC-GCGCTCGTTCATGCCATCTATCTGAACGACAAGTACAGTTTGGA 44281 || | || | | ||||| | ||||||||||||||||| |||||| |||| Sbjct 7694 AAA-ACGCCCGAGGAAGCGCTTGAAACGGCCATCTATCTGAACGATCGCTACAGTCTGGA 7752 Query 44282 CGGTCGCGACCCCAACGGGTACGTAGGATGTATGTGGTCCATTTGCGGTGTCCACGA-CA 44340 || ||||| || || |||||||| || || |||||||||||| ||| |||| || || Sbjct 7753 TGGGCGCGATCCGAATGGGTACGTCGGGTGCATGTGGTCCATTGCCGGCATCCATGATCA 7812 Query 44341 GGGCGTGGCGAGAGCTACCCATCTACGGCAAAGTGCGCTACATGAACTACAACGGTTGCG 44400 ||| ||| |||| || | |||||| | || |||||||||||| |||| ||| Sbjct 7813 GGG-ATGGAAGGAGCGGGAAATTTTTGGCAAAATTCGGTACATGAACTACGACGGCTGCA 7871 Query 44401 TCAGAAAGTTTGATGTAAA 44419 |||||||||| || || Sbjct 7872 AGCGAAAGTTTGACGTGAA 7890 >seq5453 Length=57727 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| || || || |||| ||||||||||| || || || Sbjct 57727 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAG 57668 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| |||||||| || | || | | |||||||||| |||||| ||| | | Sbjct 57667 ATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTC 57608 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||| || || || ||||||| ||||| || || || |||| ||| ||||| Sbjct 57607 TCGATCGTATCCGACGGCTCGACCTCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCACG 57548 Query 35726 AATATCTGCATTCTGTG 35742 || ||||||||||| || Sbjct 57547 AAGATCTGCATTCTATG 57531 >seq13424 Length=49246 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 35507 TTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCG 35566 |||||||| || | || | ||||| || || || |||||| || |||||||| ||| Sbjct 218 TTTCCACCGCGAAGCCGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCG 159 Query 35567 GCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAA 35626 | || || || |||| ||||||||||| || || || |||| |||||||| || | Sbjct 158 GACAGAGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGC 99 Query 35627 GGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 || | | |||||||||| |||||| ||| | | | | ||| || || || Sbjct 98 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGTATCCGACGGCTCG 39 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 ||||||| ||||| || || || |||| ||| ||||| Sbjct 38 ACCTCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCAC 1 >seq6044 Length=6192 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| ||| | || |||||| || || |||||||||| || ||| || | || || Sbjct 4484 CACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCGGACAGGGTGCGGCCATCCTC 4425 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || || || || | |||||||| |||| || | | |||||||||| Sbjct 4424 CAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATACCCTCCTTGTCCTG 4365 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||||| | | | | ||| || | || ||||| | || || || || Sbjct 4364 GATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTT 4305 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||| | ||||| || || |||||||| Sbjct 4304 ACCCGTGAGGGTTTTGACGAAGATCTGCAT 4275 >seq3338 Length=23718 Score = 87.8 bits (96), Expect = 2e-12 Identities = 165/240 (69%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 41194 TGCGCGACACGATCACCCTTCATCACCACAAAGTCCACGTCGTTGTTGTTCACCATCACT 41253 ||||| | ||||||||||||| ||||| | || ||||| ||| | ||| | || ||| Sbjct 20633 TGCGCAATACGATCACCCTTCTTCACCTCGAAATCCACTTCGGAATGGTTGAACAGCACA 20692 Query 41254 ATGCCCACGTTGCCCGTGTAGTCGGGATCGATGACGCCAGCAGCAATGTCGATCTTGTGC 41313 | || ||||| ||| |||||| || | |||||| || | | ||||| || Sbjct 20693 ACACCAACGTTTCCCCGGTAGTCCTCGTCAACGACGCCTGCCCCCACATCGATGAAGTTT 20752 Query 41314 TTCAACGCCAGCCCCGATCGGGGCGCGATCCTACCGTAACAATCTTTGGGCAGCTGCAGA 41373 |||| ||||||||| || || || || | | |||||||| ||| || | ||||| Sbjct 20753 TTCACCGCCAGCCCGGAGCGTGGTGCTACACGTCCGTAACAGCCTTCCGGTACCTGCACC 20812 Query 41374 GCAATGTCCGTCTTGATCAGCGTGCGGTCGT-GGCGCGGAACGATGTAGTCGTAGGCGCT 41432 ||||| ||| | | ||| ||| | | || ||| || |||||||||||||||| Sbjct 20813 TGGATGTCAGTCATTACGAGC-TGCTTACCTCGGGCCGGCACCGTGTAGTCGTAGGCGCT 20871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450712417707560