Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20No._204_20[genbank_20GCA_5F000956215.1_202015- 03-19] 14,407 sequences; 146,379,160 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq8295 163 9e-35 seq14285 138 3e-27 seq633 132 1e-25 seq6375 95.1 4e-14 seq1873 93.3 1e-13 seq2774 91.5 4e-13 seq1776 91.5 4e-13 seq13561 89.7 2e-12 seq732 86.0 2e-11 >seq8295 Length=14778 Score = 163 bits (180), Expect = 9e-35 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 140505 TACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAA 140564 ||| |||||||||| | || || || || ||||| || || || || || || || || Sbjct 4911 TACTTACCACCACGGAGTCGGAGCACCAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAG 4970 Query 140565 TCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCA 140624 || || | || || |||||||| || ||||| || || ||||| ||||| |||||||| Sbjct 4971 TCCGACAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCC 5030 Query 140625 GGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGT 140684 ||||| ||||| || || ||||| || || || || ||||| || |||| || || || Sbjct 5031 GGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTTTCGATCGTGTCCGAAGGC 5090 Query 140685 TCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || ||||| || | ||||| ||||| |||||||| || ||||||||||| Sbjct 5091 TCGACCTCAAGAGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 5143 >seq14285 Length=18903 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || ||||| ||||| || || ||||| || || || | || || |||||| Sbjct 191 AGCACCAGGTGGAGAGTGGACTCCTTCTGGATATTGTAGTCTGACAGGGTACGGCCATCT 132 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || ||||| || ||||| ||||| |||||||| ||||| || ||||| |||||| Sbjct 131 TCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGAGGGATGCCTTCCTTATCC 72 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 ||||| ||||| || || || || || | || ||||| || || || || || | ||| Sbjct 71 TGAATCTTAGCCTTCACGTTCTCGATGGTGTCCGATGGCTCCACCTCCAGCGTGATGGTC 12 Query 140706 TTTCCGGTTAG 140716 |||||||| || Sbjct 11 TTTCCGGTCAG 1 >seq633 Length=15238 Score = 132 bits (146), Expect = 1e-25 Identities = 124/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 140580 CCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCT 140639 |||||||| || || ||||| || ||||| ||||| |||||||| ||||| || ||||| Sbjct 1 CCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGAGGGATGCCTTCC 60 Query 140640 TTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTA 140699 ||||||||||| ||||| || || || || || | || ||||| || || || || || Sbjct 61 TTATCCTGAATCTTAGCCTTCACGTTCTCGATGGTGTCCGATGGCTCCACCTCCAGCGTG 120 Query 140700 ACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||||||||| || || || || ||||||||||| Sbjct 121 ATGGTCTTTCCGGTCAGAGTCTTGACGAAAATCTGCAT 158 >seq6375 Length=12324 Score = 95.1 bits (104), Expect = 4e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | | Sbjct 11895 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 11836 Query 235950 CCCAGCATCTCCATACA 235966 ||| ||||||||| ||| Sbjct 11835 CCCGGCATCTCCAAACA 11819 >seq1873 Length=46646 Score = 93.3 bits (102), Expect = 1e-13 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 235889 GGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAA 235948 ||||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | Sbjct 6310 GGGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGAT 6369 Query 235949 ACCCAGCATCTCCA 235962 |||| ||||||||| Sbjct 6370 ACCCGGCATCTCCA 6383 >seq2774 Length=25045 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | | Sbjct 18786 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 18845 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 18846 CCCGGCATCTCCA 18858 >seq1776 Length=19606 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | | Sbjct 7323 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 7264 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 7263 CCCGGCATCTCCA 7251 >seq13561 Length=47919 Score = 89.7 bits (98), Expect = 2e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 235889 GGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAA 235948 ||||||||||| ||| ||||||| ||||||||| ||||| ||||||||| |||||| | Sbjct 36074 GGGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACGGGGATCGAT 36015 Query 235949 ACCCAGCATCTCCA 235962 |||| ||||||||| Sbjct 36014 ACCCCGCATCTCCA 36001 >seq732 Length=9426 Score = 86.0 bits (94), Expect = 2e-11 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 235893 GATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAACCC 235952 ||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | |||| Sbjct 4 GATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATACCC 63 Query 235953 AGCATCTCCA 235962 ||||||||| Sbjct 64 GGCATCTCCA 73 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514974699663821