Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20No._204_20[genbank_20GCA_5F000956215.1_202015- 03-19] 14,407 sequences; 146,379,160 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4824 136 4e-27 seq8407 127 2e-24 >seq4824 Length=29019 Score = 136 bits (150), Expect = 4e-27 Identities = 238/342 (70%), Gaps = 11/342 (3%) Strand=Plus/Minus Query 124509 TGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGCTGCAACATAAGCCAC 124568 ||||| || ||||| |||| ||||||||||| || | |||||||| ||| | |||| Sbjct 22969 TGCGTTTCGCCCGTCGCAATGACGAAATCTTCCGGCTGCTTCTGCTGCATCATCAACCAC 22910 Query 124569 ATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCGAGC 124628 || |||| ||||||||| | ||||| |||||||||||||| | ||| || || |||||| Sbjct 22909 ATTGCTTCGACGTAGTCTTTCGCGTGGCCCCAGTCGCGCTTCGAATCGAGATTACCGAGC 22850 Query 124629 TCGATTGGCT-----TGGCCG-TCTTGTTCCACTCCGCCAAACCCAGTGTAATCTTGCGC 124682 |||| || |||||| | || | || || | | | || || ||||| Sbjct 22849 TCGACGCACTCCTGCTGGCCGAGCGAAATCTTCGCCACCGAGC---GAGTGATTTTGCGT 22793 Query 124683 GTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCAGTACACGCA 124742 |||||||| | ||| | || || ||||||||||| ||||| || |||| ||| Sbjct 22792 GTCACAAAGTTCTCACCCCTGCGGGGTGATTCGTGGTTGAAAAGAATACCGTTACAGGCA 22733 Query 124743 AACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAGAGCTT-GGACAC 124801 ||||| ||||| |||||| || || || ||||| || || | | || | |||| Sbjct 22732 AACATGTTGTACGCCTCGCGATAATTGATCACTATCCAGTAGCCGTACATTTTCGCACAC 22673 Query 124802 GCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTG 124843 | | || || || || |||||||| || ||||| || || Sbjct 22672 G-CGTACGGCGAGCGCGGATAGAATGGAGTTTTTTCGTTCTG 22632 Score = 114 bits (126), Expect = 1e-20 Identities = 198/284 (70%), Gaps = 9/284 (3%) Strand=Plus/Minus Query 158959 TGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCCAC 159018 ||||| || || |||||||| || || || || || ||| || | ||| | |||| Sbjct 22969 TGCGTTTCGCCCGTCGCAATGACGAAATCTTCCGGCTGCTTCTGCTGCATCATCAACCAC 22910 Query 159019 ATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCCGAGC 159078 || || |||||||| || | |||||| |||||||||||||| | ||| | || |||||| Sbjct 22909 ATTGCTTCGACGTAGTCTTTCGCGTGGCCCCAGTCGCGCTTCGAATCGAGATTACCGAGC 22850 Query 159079 TCGATG-ACTTTTCCAGACTTTTTCCACTCAGCCAGACCGAGC--GTGATCTTGCGCGTC 159135 |||| | ||| | | | | | || | ||||||| ||||| ||||| ||| Sbjct 22849 TCGACGCACTCCTGCTGGCCGAGCGAAATCTTCGCCACCGAGCGAGTGATTTTGCGTGTC 22790 Query 159136 ACAAA---CTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGAATGCCGGTACAAGCG 159192 ||||| ||| | | ||| || || || ||||| || ||||| ||| |||| || Sbjct 22789 ACAAAGTTCTCACCCCTGCGGGGT---GATTCGTGGTTGAAAAGAATACCGTTACAGGCA 22733 Query 159193 AACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCC 159236 |||| ||| || | |||||| ||||| | ||||||||| || Sbjct 22732 AACATGTTGTACGCCTCGCGATAATTGATCACTATCCAGTAGCC 22689 >seq8407 Length=16212 Score = 127 bits (140), Expect = 2e-24 Identities = 311/461 (67%), Gaps = 18/461 (4%) Strand=Plus/Plus Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933 ||||||||||||| || || |||||||||| ||| | ||||||||| || || || Sbjct 7147 ATCCGGTACCGATACCGTCCGCACCGTTGATCAGCAGCATCGGCACGATCGGCAGATACC 7206 Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993 | ||| || | | || ||| || | | ||| | || | | || ||| || Sbjct 7207 AAATCGGTTCGATTCGCTGGTTGTCCTCGAACTGGTACTCCAGCAGCGGATCGTCCAGCG 7266 Query 151994 GATCGAATATCCGTCGAGTCATAG--GAC-TCAAACGCGTGAAGATGTATCGGGAGCTGG 152050 | | ||| || | || |||| | ||| ||| |||||||||||| | | ||||| Sbjct 7267 GGTGGAAAATGCACCGCGTCAGGGCCGACATCAT---CGTGAAGATGTACCTCGGGCTGG 7323 Query 152051 CCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGA 152110 | ||| ||||| || | || |||||| |||||||| || || | || ||||||| Sbjct 7324 CGCTATCTTTGCCGCCCGTCAACCGCGTACCAAACTGACCGCCCGGATACAGCAGGTTGA 7383 Query 152111 GGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCT- 152169 ||||||| ||| ||| | ||||| |||| || | ||||| | ||||| || Sbjct 7384 TGTTGTTGCTGCCGACGTAGTTCTGCGCCAGGTTGATGATCGT--CGAGCAGAGCGACTG 7441 Query 152170 -TCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCAT 152228 || ||||| || || || | | ||||| | | ||||||||||| |||||||||| Sbjct 7442 CTCGCCGTGATGGTAGGCGGACATTTCCGCCACCGAACCCGCCAACTGGGCCACCTTCAC 7501 Query 152229 GTC-CG-TCGTCAGGTTCTTCTTGAGACAGGCGTAA--ATCACCTTGCGCTGGGATGGTT 152284 || || | ||| ||| ||||| || ||||| | |||||| |||||| || | Sbjct 7502 CTCGCGCTTGTC--GTTACGCTTGAAGCA--CGTAAACAGCACCTTCCGCTGGCCCGGCT 7557 Query 152285 TCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTCC 152325 |||| ||||||| || | || ||||| ||| | ||||| Sbjct 7558 TCAACCCGTCCAGCATGCACGGGATCGAGCGCACGTTGTCC 7598 Score = 120 bits (132), Expect = 3e-22 Identities = 276/412 (67%), Gaps = 19/412 (5%) Strand=Plus/Plus Query 117977 AGCTGAGGCCAGTACACGTGGATCATGTTCAGCACGAGCCCCTTGATATGGGAACCGTCC 118036 |||| ||||||| | |||||| | ||| | || |||||||| || || || || ||| Sbjct 8037 AGCTCCGGCCAGTTCGTGTGGATAAAGTTGATCAGCAGCCCCTTAATGTGCGACCCATCC 8096 Query 118037 AGATCCGCATCGGTCATGATCATCAGGCGGCCGTACCGTAAA-TCTCTCAG-------GG 118088 ||||| ||| ||||||||||||| |||||||| | ||| |||| | Sbjct 8097 TGATCCTGATCCGTCATGATCATCACCTTACCGTACCGCAGCGTCT-TCAGATCATCCGT 8155 Query 118089 AGTTATAAACCTTACCATGT--TGGAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTC 118146 || | | || || | ||| || | |||||||||||| | |||||| | |||| | Sbjct 8156 CGTCAGATACTTTTTCTTGTACTGCAACCCGAGGATCTTGATCAGGTTGTTGATTTCCGC 8215 Query 118147 ATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGG 118206 || ||| | ||| || || || || || ||||| || ||||||| ||||| || Sbjct 8216 GTTCTCCAGAATCTGCTTGTGAGTCGCTTCGCGCACGTTCAGCAGCTTACCGCGCAGCGG 8275 Query 118207 AAACACGCCAAACTTGTCACGGCCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGC 118266 |||||| || || | || || || || || | || || | | || | | || || Sbjct 8276 AAACACACCGTACGTATCGCGACCGACCACTCCCAGCCCCGACACGGCCAACGTTTTGGC 8335 Query 118267 CGAGTCACCCTCGGTAATAATAAGAGTGCACTCGGTGCTGCGA----TGAGTACCGGCCC 118322 |||||| |||||||| | || || ||||| || | |||| | | |||||| Sbjct 8336 CGAGTCTCCCTCGGTCAGGATGAGCGTGCA----GTTCAGCGAATTGCGCGAACCGGCAT 8391 Query 118323 AATTAGCATCATCCAGCTTCGGAACGCCCGTAATGCGCGACTTTTTGGACCC 118374 || ||||| ||||||||||| | |||| |||| |||||| || || || Sbjct 8392 CGTTCGCATCCTCCAGCTTCGGGATGCCCTTAATCTTCGACTTCTTCGAACC 8443 Score = 116 bits (128), Expect = 4e-21 Identities = 277/417 (66%), Gaps = 9/417 (2%) Strand=Plus/Plus Query 152742 CAGCTTCGGCCAGTACACGTGGAACATGTTGAGGACCAAGCCCTTGATGTGCGATCCGTC 152801 ||||| |||||||| | ||||| | ||||| | || ||||| |||||||| || || Sbjct 8036 CAGCTCCGGCCAGTTCGTGTGGATAAAGTTGATCAGCAGCCCCTTAATGTGCGACCCATC 8095 Query 152802 AAGATCCGCGTCGGTCATGATCATCAGACGACCGTAGCGCAG-GTCACGTAGTGACCCGT 152860 ||||| || ||||||||||||| |||||| ||||| ||| | | |||| Sbjct 8096 CTGATCCTGATCCGTCATGATCATCACCTTACCGTACCGCAGCGTCTTCAGATCATCCGT 8155 Query 152861 AG------ACCTTTCCATGT--TGAAGCCCGAGGATCTTTTTGAGGTTGGAAAATTCCTC 152912 | || ||| | ||| || | |||||||||||| | |||||| | |||| | Sbjct 8156 CGTCAGATACTTTTTCTTGTACTGCAACCCGAGGATCTTGATCAGGTTGTTGATTTCCGC 8215 Query 152913 ATTATCGGTCACCTGTTTCACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGG 152972 || || | ||| || || || || || || || || |||| || || || || Sbjct 8216 GTTCTCCAGAATCTGCTTGTGAGTCGCTTCGCGCACGTTCAGCAGCTTACCGCGCAGCGG 8275 Query 152973 AAACACGCCGAACGCGTTGCGGCCTACAACGCTCAGACCGGCAATAGCAAGGGCTTTCGC 153032 |||||| ||| ||| | ||| || || || | ||| || | | || | | ||| || Sbjct 8276 AAACACACCGTACGTATCGCGACCGACCACTCCCAGCCCCGACACGGCCAACGTTTTGGC 8335 Query 153033 CGAGTCACCCTCGGTGATAATAAGCGTACAGTCGTGAGACCGATGAGTACCGGCCCAGTT 153092 |||||| |||||||| | || ||||| |||| | || | | |||||| ||| Sbjct 8336 CGAGTCTCCCTCGGTCAGGATGAGCGTGCAGTTCAGCGAATTGCGCGAACCGGCATCGTT 8395 Query 153093 GGCGTCGTCAAGCTTGGGGATTCCCGTGATCCTGCTTTTCTTAGAGCCGTCGGTTTT 153149 || || || ||||| ||||| ||| | ||| | ||||| || ||| ||||| Sbjct 8396 CGCATCCTCCAGCTTCGGGATGCCCTTAATCTTCGACTTCTTCGAACCGGAAGTTTT 8452 Score = 86.0 bits (94), Expect = 7e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 119064 TAAATTTCGAACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCA 119123 |||| || | ||||| | |||| ||||| |||||||| ||||| || |||||||||| Sbjct 9196 TAAACTTGGTGCTGAAGATGTTGCACAGCTTCGCACCGTACCCGTTACGGCCACCGGTCA 9255 Query 119124 CGCGCTGCTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGAT 119175 | || |||||| |||||||||||||| ||| | || ||||| ||||| Sbjct 9256 CCTTCTCCTCCTCATCGTTGTAGTTGGACGAGGTGAGCAGATGCCCGAAGAT 9307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547117453238600