Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20farauti_20No._204_20[genbank_20GCA_5F000956215.1_202015- 03-19] 14,407 sequences; 146,379,160 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq14080 176 4e-39 seq13424 127 2e-24 seq6044 125 6e-24 seq8295 120 3e-22 seq633 102 7e-17 >seq14080 Length=20585 Score = 176 bits (194), Expect = 4e-39 Identities = 227/311 (73%), Gaps = 7/311 (2%) Strand=Plus/Plus Query 135465 ATGACCCGTTGTGGAACGCGGCACAACGGCAGCTTAAGCGA--GAAGGCAAAATGCACGG 135522 |||||| |||||||||| || || | |||||| || || || | ||| |||||||| Sbjct 7596 ATGACC---TGTGGAACGCAGCCCAGCTGCAGCT--AGTGAAGGAGGCCAAGATGCACGG 7650 Query 135523 ATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGC 135582 || |||||||||||||||| || || ||| | || ||| | | |||| | || || Sbjct 7651 GTTCCTGCGCATGTATTGGGCGAAGAAAATACTAGAGTGGACGAAAACGCCCGAGGAAGC 7710 Query 135583 GCTACAACACGCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGG 135642 ||| || || || | | | || ||| ||||||| | ||||| |||||| | ||||| Sbjct 7711 GCTTGAAACGGCCATCTATCTGAACGATCGCTACAGTCTGGATGGGCGCGATCCGAATGG 7770 Query 135643 CTACGTAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAA 135702 ||||| || || |||||||| ||| ||| | || ||||| |||||||||||||| | Sbjct 7771 GTACGTCGGGTGCATGTGGTCCATTGCCGGCATCCATGATCAGGGATGGAAGGAGCGGGA 7830 Query 135703 AGTGTTTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTAAA 135762 | | |||||||| ||||| || |||||||| ||||| || | |||| ||| | || || Sbjct 7831 AATTTTTGGCAAAATTCGGTACATGAACTACGACGGCTGCAAGCGAAAGTTTGACGTGAA 7890 Query 135763 TTTGTACGTGA 135773 || ||||| Sbjct 7891 CGCGTTCGTGA 7901 >seq13424 Length=49246 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27000 GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAG 27059 || || |||||||| |||||| | || ||||| || || || ||||| || |||| ||| Sbjct 1 GTGAAGACTCTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCGTCGGATACGATCGAG 60 Query 27060 ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATA 27119 | ||||| || || || ||||| || || || || || ||||| |||||| | || Sbjct 61 AACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAGCAGCGTCTGATC 120 Query 27120 TACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAG 27179 | ||||||||| || |||| ||| | || | ||||| |||||||| || |||||| Sbjct 121 TTCGCCGGCAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAACATCCAGAAGGAG 180 Query 27180 TCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||| || ||||| | || | || ||||| Sbjct 181 TCGACCTTGCACTTGGTCCTCCGGCTTCGCGGTGG 215 >seq6044 Length=6192 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| | ||||| ||||| || || || || Sbjct 4275 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTCG 4334 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| |||| || || || || || ||||| || || || || || ||||| Sbjct 4335 GATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGTATCCCGCCGGATCAG 4394 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || |||| || | ||| | ||||||||||| Sbjct 4395 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGATTACAAT 4454 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||||||||| | ||| |||| | || |||| ||||| Sbjct 4455 ATCCAGAAGGAGTCGACCCTTCATCTGGTGCTTCGCCTGCGCGGTGG 4501 >seq8295 Length=14778 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| || || ||||| || ||||||||| | || |||||||| || || || | Sbjct 5145 CCATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACTCTTGAGGTCGAGCCTT 5086 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| |||| || | || || || || || ||||| || || || || || |||| Sbjct 5085 CGGACACGATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCGGATC 5026 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | |||||| | || | |||||||||||| ||||||| | || | || || |||| Sbjct 5025 AGCAGCGTCTGATCTTCGCCGGCAAACAGCTGGAAGATGGCCGCACTCTGTCGGACTACA 4966 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||| || ||||| || ||| | || |||| | || | || ||||| Sbjct 4965 ACATCCAGAAGGAATCCACCCTTCACCTGGTGCTCCGACTCCGTGGTGG 4917 >seq633 Length=15238 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||||||||||| ||| | || || || || ||||| || || Sbjct 159 CATGCAGATTTTCGTCAAGACTCTGACCGGAAAGACCATCACGCTGGAGGTGGAGCCATC 100 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| || || || ||||| || || |||||||| || || ||||| Sbjct 99 GGACACCATCGAGAACGTGAAGGCTAAGATTCAGGATAAGGAAGGCATCCCTCCAGATCA 40 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142 |||||| | || | |||||| || || ||||||| Sbjct 39 GCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGA 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434840076632640