Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1172 91.5 3e-13 seq916 91.5 3e-13 seq533 91.5 3e-13 seq456 91.5 3e-13 seq1116 89.7 1e-12 seq661 89.7 1e-12 seq583 89.7 1e-12 seq572 89.7 1e-12 seq571 89.7 1e-12 seq496 89.7 1e-12 seq473 89.7 1e-12 seq574 86.0 1e-11 >seq1172 Length=869145 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || ||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||| Sbjct 780063 CTAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 780122 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 780123 AGCCCCACGTTGGGC 780137 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 707762 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 707703 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 707702 CCCACGTTGGGC 707691 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 709262 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 709321 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 709322 CCCACGTTGGGC 709333 >seq916 Length=882720 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 433795 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 433736 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 433735 CCCCACGTTGGGC 433723 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 437358 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 437417 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 437418 CCCCACGTTGGGC 437430 >seq533 Length=343795 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || ||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||| Sbjct 195853 CTAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 195912 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 195913 AGCCCCACGTTGGGC 195927 >seq456 Length=439401 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 39837 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 39778 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 39777 CCCCACGTTGGGC 39765 >seq1116 Length=1014753 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 617975 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 618034 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 618035 CCCACGTTGGGC 618046 >seq661 Length=976588 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 369365 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 369306 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 369305 CCCACGTTGGGC 369294 >seq583 Length=1311425 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 740546 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 740487 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 740486 CCCACGTTGGGC 740475 >seq572 Length=1431544 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 146264 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 146205 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 146204 CCCACGTTGGGC 146193 >seq571 Length=259671 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 130722 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 130663 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 130662 CCCACGTTGGGC 130651 >seq496 Length=361004 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 313357 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 313298 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 313297 CCCACGTTGGGC 313286 >seq473 Length=518197 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 473479 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 473538 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 473539 CCCACGTTGGGC 473550 >seq574 Length=269012 Score = 86.0 bits (94), Expect = 1e-11 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 281740 TCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACT 281799 |||||||||||||||| | || ||| || || || ||| || | || ||||||| Sbjct 37958 TCGTGAAGATATACCTGGGGCTAGCGCTATCCTTTCCGCCCGTCAAGCGCGTACCAAACT 38017 Query 281800 GACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGA 281859 |||| | || | | | || ||||||||||| |||||||| | ||| |||| || | Sbjct 38018 GACCGCCAGGATAGAGCAGATTGATGTTATTGCTTCCGACGTAGTTCTGTGCCAAATTTA 38077 Query 281860 CGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAAC 281919 |||| ||| ||||||| |||||| || || || ||| | || || || ||| Sbjct 38078 CGATCGTCGAGCAAAGCGATTGCTCACCATGATGGTAAGCGGATTTCTCCGCGACCGAAC 38137 Query 281920 CACTGAACTGTGCTACCTTCACGTC 281944 | ||||| || |||||||| || Sbjct 38138 CTGCCAACTGCGCCACCTTCACCTC 38162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057805133708960