Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq628 122 9e-23 >seq628 Length=1452984 Score = 122 bits (134), Expect = 9e-23 Identities = 275/410 (67%), Gaps = 4/410 (1%) Strand=Plus/Plus Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTAC 16857 ||| ||||| || || || || || |||| | ||||||||||| || | | | || Sbjct 708020 ATCGGCTACGAACTCAATGTACTGTGACATCAGATCGCAGTTCATACCGAGCATATCGAC 708079 Query 16858 CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGC 16917 || || |||| |||||||||| ||||| || ||||||| || || || | Sbjct 708080 TGGCAGTGCTTTCGTCAAAAATTCCTGCTCGATTGCAACCGCATCACGGATGATGGCCGT 708139 Query 16918 AACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCA 16977 || || |||| || ||| | ||| |||| ||||||||||| || || || || || Sbjct 708140 CACGCGCTCCTTCGAAGGTTTCTGTACCAGATACTTAAACATCAGGCAGGCAAAGTCACA 708199 Query 16978 ATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCC 17037 |||| ||| || || | || || ||||| || || || | || |||||| ||| Sbjct 708200 GTGTAGTCCTTCATCACGCGAAATCAGCTCGTTCGAGAAGGTAAGTCCCGGCATCAGTCC 708259 Query 17038 TCGTTTCTTTAACCAAAATATCGCGGCGAA-CGACC-CAGAAAAGAATATACCCTCGACG 17095 || ||||| | ||| || || ||||| || | ||| | | ||||| ||||| ||||| Sbjct 708260 ACGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTACCGCTG--AAGAAGATACCTTCGACA 708317 Query 17096 GATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGC 17155 | |||||||||| | || ||| | | | || | ||| | ||||| ||| | Sbjct 708318 GCAGCAAACGCGACGACACGCTCGCCAAAGTTTGCCTTCTTGCTTGAGATCCAGTTCAGT 708377 Query 17156 ACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAA 17205 |||| ||||| || | ||| | ||| || |||||| || || || || Sbjct 708378 GCCCAATCGGCCTTCTTCTTCACGCACGGCAGCGTTTCAATTGCATTGAA 708427 Score = 109 bits (120), Expect = 6e-19 Identities = 177/252 (70%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || ||||| ||||| || || |||||| ||| ||| | || ||||| ||||| ||| Sbjct 708530 ATGTACGTGTCGATTAGCAGTGAGTACATCTCGCTGTGCACATTTTCCATCGCTATTTGA 708589 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353 || |||||||| || || ||||||| || || || ||| | ||| ||||| | || Sbjct 708590 AAGCCGTAAAAACAGCGAGCTTCCGTTACCTGTACCTCCTGGCTGAAACGTTCGACCAGG 708649 Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413 ||||||||||||||||| ||| ||||| || || || | || ||| || || | Sbjct 708650 TTTTCGTTCACGATGCCATCGGATGCGGCAAAGAAGGCAAGTACGTGCGAGATAAAGTGG 708709 Query 17414 TTTTCGTCCGGTGT-AAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTC 17472 |||| |||| | || | | |||||| || | || ||||| | |||||| ||||| Sbjct 708710 CGTTCGCTCGGTTTCAACGAATC-CCAGTCTTTCATGTCCTTGGACAGATCCACCTCTTC 708768 Query 17473 GGGGGTCCAAAA 17484 |||||| || Sbjct 708769 CACGGTCCAGAA 708780 Score = 89.7 bits (98), Expect = 5e-13 Identities = 179/258 (69%), Gaps = 8/258 (3%) Strand=Plus/Minus Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTG-TCGTGGAGCCC 119841 ||||| || | || || ||||| | ||| |||||||| | ||| ||||| | || Sbjct 270792 TTCATGTACCTAATTTTGCCGAAAATTTCACGCTCCTTCCATCC-CTGATCGTGAATGCC 270734 Query 119842 CGCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTA-ACTCGTATT 119900 ||| | | ||| | ||| || ||||| ||||| ||||| |||||| | ||| ||| Sbjct 270733 CGCAATCGACCACATGCAACCGACGTAACCGTTCGGATCGCGTCCATCCAGACT-GTACC 270675 Query 119901 TATCGTTTAAGTAGATACAGACGCTTAACGCACTT--TCAGGAGTCTCGCTCCATTCCAG 119958 |||||| | ||||| | || || | || ||| || || || | |||| || || Sbjct 270674 GATCGTTCAGATAGATG--GCCGTTTCAAGCGCTTCCTCGGGCGTTTTTGTCCACTCGAG 270617 Query 119959 TAtttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTG 120018 ||| ||||| ||||||||||| | || | || ||||||||||| || ||||| || Sbjct 270616 TATCTTTTTGGCCCAGTACATCCTTAGAAAGCCGTGCATTTTACCCTCCTTTACCATCTG 270557 Query 120019 AAGTTGTGCGGCGTTCCA 120036 || || || | |||||| Sbjct 270556 CAGCTGGGCCGAGTTCCA 270539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517536594706560