Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq628 122 9e-23
>seq628
Length=1452984
Score = 122 bits (134), Expect = 9e-23
Identities = 275/410 (67%), Gaps = 4/410 (1%)
Strand=Plus/Plus
Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTAC 16857
||| ||||| || || || || || |||| | ||||||||||| || | | | ||
Sbjct 708020 ATCGGCTACGAACTCAATGTACTGTGACATCAGATCGCAGTTCATACCGAGCATATCGAC 708079
Query 16858 CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGC 16917
|| || |||| |||||||||| ||||| || ||||||| || || || |
Sbjct 708080 TGGCAGTGCTTTCGTCAAAAATTCCTGCTCGATTGCAACCGCATCACGGATGATGGCCGT 708139
Query 16918 AACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCA 16977
|| || |||| || ||| | ||| |||| ||||||||||| || || || || ||
Sbjct 708140 CACGCGCTCCTTCGAAGGTTTCTGTACCAGATACTTAAACATCAGGCAGGCAAAGTCACA 708199
Query 16978 ATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCC 17037
|||| ||| || || | || || ||||| || || || | || |||||| |||
Sbjct 708200 GTGTAGTCCTTCATCACGCGAAATCAGCTCGTTCGAGAAGGTAAGTCCCGGCATCAGTCC 708259
Query 17038 TCGTTTCTTTAACCAAAATATCGCGGCGAA-CGACC-CAGAAAAGAATATACCCTCGACG 17095
|| ||||| | ||| || || ||||| || | ||| | | ||||| ||||| |||||
Sbjct 708260 ACGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTACCGCTG--AAGAAGATACCTTCGACA 708317
Query 17096 GATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGC 17155
| |||||||||| | || ||| | | | || | ||| | ||||| ||| |
Sbjct 708318 GCAGCAAACGCGACGACACGCTCGCCAAAGTTTGCCTTCTTGCTTGAGATCCAGTTCAGT 708377
Query 17156 ACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAA 17205
|||| ||||| || | ||| | ||| || |||||| || || || ||
Sbjct 708378 GCCCAATCGGCCTTCTTCTTCACGCACGGCAGCGTTTCAATTGCATTGAA 708427
Score = 109 bits (120), Expect = 6e-19
Identities = 177/252 (70%), Gaps = 2/252 (1%)
Strand=Plus/Plus
Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293
|| ||||| ||||| || || |||||| ||| ||| | || ||||| ||||| |||
Sbjct 708530 ATGTACGTGTCGATTAGCAGTGAGTACATCTCGCTGTGCACATTTTCCATCGCTATTTGA 708589
Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353
|| |||||||| || || ||||||| || || || ||| | ||| ||||| | ||
Sbjct 708590 AAGCCGTAAAAACAGCGAGCTTCCGTTACCTGTACCTCCTGGCTGAAACGTTCGACCAGG 708649
Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413
||||||||||||||||| ||| ||||| || || || | || ||| || || |
Sbjct 708650 TTTTCGTTCACGATGCCATCGGATGCGGCAAAGAAGGCAAGTACGTGCGAGATAAAGTGG 708709
Query 17414 TTTTCGTCCGGTGT-AAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTC 17472
|||| |||| | || | | |||||| || | || ||||| | |||||| |||||
Sbjct 708710 CGTTCGCTCGGTTTCAACGAATC-CCAGTCTTTCATGTCCTTGGACAGATCCACCTCTTC 708768
Query 17473 GGGGGTCCAAAA 17484
|||||| ||
Sbjct 708769 CACGGTCCAGAA 708780
Score = 89.7 bits (98), Expect = 5e-13
Identities = 179/258 (69%), Gaps = 8/258 (3%)
Strand=Plus/Minus
Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTG-TCGTGGAGCCC 119841
||||| || | || || ||||| | ||| |||||||| | ||| ||||| | ||
Sbjct 270792 TTCATGTACCTAATTTTGCCGAAAATTTCACGCTCCTTCCATCC-CTGATCGTGAATGCC 270734
Query 119842 CGCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTA-ACTCGTATT 119900
||| | | ||| | ||| || ||||| ||||| ||||| |||||| | ||| |||
Sbjct 270733 CGCAATCGACCACATGCAACCGACGTAACCGTTCGGATCGCGTCCATCCAGACT-GTACC 270675
Query 119901 TATCGTTTAAGTAGATACAGACGCTTAACGCACTT--TCAGGAGTCTCGCTCCATTCCAG 119958
|||||| | ||||| | || || | || ||| || || || | |||| || ||
Sbjct 270674 GATCGTTCAGATAGATG--GCCGTTTCAAGCGCTTCCTCGGGCGTTTTTGTCCACTCGAG 270617
Query 119959 TAtttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTG 120018
||| ||||| ||||||||||| | || | || ||||||||||| || ||||| ||
Sbjct 270616 TATCTTTTTGGCCCAGTACATCCTTAGAAAGCCGTGCATTTTACCCTCCTTTACCATCTG 270557
Query 120019 AAGTTGTGCGGCGTTCCA 120036
|| || || | ||||||
Sbjct 270556 CAGCTGGGCCGAGTTCCA 270539
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517536594706560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |