Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq628 122 9e-23 >seq628 Length=1452984 Score = 122 bits (134), Expect = 9e-23 Identities = 195/273 (71%), Gaps = 8/273 (3%) Strand=Plus/Minus Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTG-TCGTGGAGTCC 118994 |||||||| | || || || || | ||||||||||||| | ||| ||||| | || Sbjct 270792 TTCATGTACCTAATTTTGCCGAAAATTTCACGCTCCTTCCATCC-CTGATCGTGAATGCC 270734 Query 118995 TGCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTA-ACTCGTACT 119053 || | | ||| | || || ||||| ||||| ||||| ||| || | ||| |||| Sbjct 270733 CGCAATCGACCACATGCAACCGACGTAACCGTTCGGATCGCGTCCATCCAGACT-GTACC 270675 Query 119054 TATCGTTTAAGTAGATACAGACGCTTAACGCACTT--TCCGGAGTCTTACTCCATTCCAG 119111 |||||| | ||||| | || || | || ||| || || || || |||| || || Sbjct 270674 GATCGTTCAGATAGATG--GCCGTTTCAAGCGCTTCCTCGGGCGTTTTTGTCCACTCGAG 270617 Query 119112 TAtttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTG 119171 ||| ||||| ||||||||||| | || | | ||||||||||||||||| || | |||||| Sbjct 270616 TATCTTTTTGGCCCAGTACATCCTTAGAAAGCCGTGCATTTTACCCTCCTTTACCATCTG 270557 Query 119172 AAGTTGTGCGGTGTTCCATAGAGGATCGTGTGT 119204 || || || | |||||| ||| ||||| || Sbjct 270556 CAGCTGGGCCGAGTTCCAAAGATCGTCGTGCGT 270524 Score = 93.3 bits (102), Expect = 4e-14 Identities = 273/413 (66%), Gaps = 6/413 (1%) Strand=Plus/Plus Query 16036 ATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAG-TCGTA 16094 ||| ||||| || || || || || |||| | ||||| || || || | | ||| | Sbjct 708020 ATCGGCTACGAACTCAATGTACTGTGACATCAGATCGCAGTTCATACCGAGCATATCG-A 708078 Query 16095 CCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGG 16154 | || || ||||| || ||||||| || || || ||||||| || ||||| | | Sbjct 708079 CTGGCAGTGCTTTCGTCAAAAATTCCTGCTCGATTGCAACCGCATCACGGATGATGGCCG 708138 Query 16155 TGGCTCG-TGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCG 16213 | | || | ||| || ||| | || || | |||||||| || || || ||||| Sbjct 708139 TCACGCGCTCCTTC-GAAGGTTTCTGTACCAGATACTTAAACATCAGGCAGGCAAAGTCA 708197 Query 16214 CAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTT 16273 || ||||||||||| || | || || ||||| || || || | || ||||| | Sbjct 708198 CAGTGTAGTCCTTCATCACGCGAAATCAGCTCGTTCGAGAAGGTAAGTCCCGGCATCAGT 708257 Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333 || || ||||| | |||||| || || ||||| || ||||| ||||| || ||| Sbjct 708258 CCACGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTACCGCTGAAGAAGATACCTTCGACA 708317 Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAG-CATCTTTATTACGAATCCATTTCTG 16392 | ||||| |||| | || || | | | | | |||| || | ||||| ||| | Sbjct 708318 GCAGCAAACGCGACGACACGCTCGCCAAAGTTTGCCTTCTTGCTTGAG-ATCCAGTTCAG 708376 Query 16393 TACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACA 16445 | |||| ||||| || | || | || || |||||| || || || |||| Sbjct 708377 TGCCCAATCGGCCTTCTTCTTCACGCACGGCAGCGTTTCAATTGCATTGAACA 708429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511405501389440