Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq628 122 9e-23
>seq628
Length=1452984
Score = 122 bits (134), Expect = 9e-23
Identities = 195/273 (71%), Gaps = 8/273 (3%)
Strand=Plus/Minus
Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTG-TCGTGGAGTCC 118994
|||||||| | || || || || | ||||||||||||| | ||| ||||| | ||
Sbjct 270792 TTCATGTACCTAATTTTGCCGAAAATTTCACGCTCCTTCCATCC-CTGATCGTGAATGCC 270734
Query 118995 TGCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTA-ACTCGTACT 119053
|| | | ||| | || || ||||| ||||| ||||| ||| || | ||| ||||
Sbjct 270733 CGCAATCGACCACATGCAACCGACGTAACCGTTCGGATCGCGTCCATCCAGACT-GTACC 270675
Query 119054 TATCGTTTAAGTAGATACAGACGCTTAACGCACTT--TCCGGAGTCTTACTCCATTCCAG 119111
|||||| | ||||| | || || | || ||| || || || || |||| || ||
Sbjct 270674 GATCGTTCAGATAGATG--GCCGTTTCAAGCGCTTCCTCGGGCGTTTTTGTCCACTCGAG 270617
Query 119112 TAtttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTG 119171
||| ||||| ||||||||||| | || | | ||||||||||||||||| || | ||||||
Sbjct 270616 TATCTTTTTGGCCCAGTACATCCTTAGAAAGCCGTGCATTTTACCCTCCTTTACCATCTG 270557
Query 119172 AAGTTGTGCGGTGTTCCATAGAGGATCGTGTGT 119204
|| || || | |||||| ||| ||||| ||
Sbjct 270556 CAGCTGGGCCGAGTTCCAAAGATCGTCGTGCGT 270524
Score = 93.3 bits (102), Expect = 4e-14
Identities = 273/413 (66%), Gaps = 6/413 (1%)
Strand=Plus/Plus
Query 16036 ATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAG-TCGTA 16094
||| ||||| || || || || || |||| | ||||| || || || | | ||| |
Sbjct 708020 ATCGGCTACGAACTCAATGTACTGTGACATCAGATCGCAGTTCATACCGAGCATATCG-A 708078
Query 16095 CCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGG 16154
| || || ||||| || ||||||| || || || ||||||| || ||||| | |
Sbjct 708079 CTGGCAGTGCTTTCGTCAAAAATTCCTGCTCGATTGCAACCGCATCACGGATGATGGCCG 708138
Query 16155 TGGCTCG-TGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCG 16213
| | || | ||| || ||| | || || | |||||||| || || || |||||
Sbjct 708139 TCACGCGCTCCTTC-GAAGGTTTCTGTACCAGATACTTAAACATCAGGCAGGCAAAGTCA 708197
Query 16214 CAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTT 16273
|| ||||||||||| || | || || ||||| || || || | || ||||| |
Sbjct 708198 CAGTGTAGTCCTTCATCACGCGAAATCAGCTCGTTCGAGAAGGTAAGTCCCGGCATCAGT 708257
Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333
|| || ||||| | |||||| || || ||||| || ||||| ||||| || |||
Sbjct 708258 CCACGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTACCGCTGAAGAAGATACCTTCGACA 708317
Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAG-CATCTTTATTACGAATCCATTTCTG 16392
| ||||| |||| | || || | | | | | |||| || | ||||| ||| |
Sbjct 708318 GCAGCAAACGCGACGACACGCTCGCCAAAGTTTGCCTTCTTGCTTGAG-ATCCAGTTCAG 708376
Query 16393 TACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACA 16445
| |||| ||||| || | || | || || |||||| || || || ||||
Sbjct 708377 TGCCCAATCGGCCTTCTTCTTCACGCACGGCAGCGTTTCAATTGCATTGAACA 708429
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511405501389440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |