Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq872 365 5e-96 >seq872 Length=887634 Score = 365 bits (404), Expect = 5e-96 Identities = 1222/1884 (65%), Gaps = 32/1884 (2%) Strand=Plus/Plus Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858 ||||||| || ||||| |||| | || ||||| || || || |||||||| ||| Sbjct 220940 TTGTCCACCGTAAATTGGATGGCATTTACGGCCGGTTTGGTGCGCAGGTAGTACATGCCC 220999 Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918 || ||||| || | |||| |||| ||||| || || || ||| ||| |||| Sbjct 221000 GTCTTTAGTCCCATCTTCCACGCGTAGAAATGGATCGACGTCAGCTTGCCATAGTTCGGC 221059 Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978 || || | || || || | ||||| |||||||| || ||||||| || || ||| Sbjct 221060 TCGGCCACGTGTATGTTAAATGATTGTGACTGATCGATAAACGCTCCCCGATCGGCCGCC 221119 Query 52979 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 53037 ||||| ||| || || | || ||||| | || || || | |||| | | | Sbjct 221120 ATTTTGATGGATGTTTTCACCGAGATCTCCCATACCGTCTTGTACAGGTCGCGGATTTCC 221179 Query 53038 TTCTGGAAGGTTTGTAT--TCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATC 53095 || | | | || || | ||||| ||||| | || || | ||||| || Sbjct 221180 TTTGGTATTGATTCAATGTTTTGAATCGATCCGTTGTTGGACAAGATGTTGTTCTTCATG 221239 Query 53096 TCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGA 53155 ||| || ||| || || | |||| | || || ||||| | || || || || Sbjct 221240 TCAAGATCCCACAAACCCATCGCTGTTAGATCTTGCAGCAGATGATGGTTCACCACCTGG 221299 Query 53156 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCA 53215 || || || || | || | || |||||| || || ||||| || | |||||| Sbjct 221300 AACTCGCCCGATAGCACACGTCGGTTGTAAACGTTCGACGTGTACGGCTCGAAGGACTCA 221359 Query 53216 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTT 53275 || || ||||| ||||| || || || || |||||||| ||||||| || || || Sbjct 221360 TTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCATCGGTGCCAGCAGTAGCGAGTTA 221419 Query 53276 CTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGT 53335 | || ||||| || || || || || | | ||| ||||| ||||||| |||| Sbjct 221420 CGAATACCGTGCTTTGCAATCTTCTCCTTCAACTCTGTCCAGTTCCACAGATCCGTCGGT 221479 Query 53336 ACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGT 53394 | ||||| | ||| || || | | || | ||| |||| || Sbjct 221480 TCTTTGTTCCACATTTCGTACTGTAGGACACCCTTGCTCACTGGACAA-CCTTCATACGT 221538 Query 53395 ATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAAT 53454 |||||||| || ||| |||| | ||| || || || || | ||| || || || || Sbjct 221539 CTCGTATGGACCGTCCCGTGCAGCCAATTCGCAGCTTGCTTCCAGTGCTCCATAGTAGAT 221598 Query 53455 GGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAA 53514 |||||| || || | | ||| || | ||| || || ||| || ||||||| | Sbjct 221599 GGTTTCAAATATTTGTTGATTCAGCTTTTGGGCCTCTTCGCTTTCGTATGGATAGCGCAT 221658 Query 53515 GAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 53574 | ||| ||||| || || | || || ||||| |||||||| || || || | | | || Sbjct 221659 TAAAATGAACGCATCGGCCATGCCCTGCACACCGATACCGATGGGCCTGTGGCGCATGTT 221718 Query 53575 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTC- 53633 || | || || || | ||||| || || || || || ||||| || || || | Sbjct 221719 GGAACGCTTCGCCTCCGGCACCGGATAGTAGTTTATGTCGATGATTTTGTTCAGATTGCG 221778 Query 53634 TGACAATTACT---TTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCC-ATC---T 53686 || ||||| ||| | ||||||||||| || | ||||| | |||| ||| | Sbjct 221779 TG----TTACTATCTTGGCGACATCCTTCAGCTTTACGAAATCGTAC-GTCCTATCGGAT 221833 Query 53687 ATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATC- 53745 |||| |||||||||| ||| || || |||||||| ||||| || | |||| | || Sbjct 221834 TTTACGAACATGTTCAGTGCGATCGAGGCCAGATTGCAAACCGCAATTTCATC--CTTCG 221891 Query 53746 -CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 53804 || || | | ||||||||||| | ||| |||||| ||||| || | || || | Sbjct 221892 ACGAGTACTCCACAATCTCAGTGCACAAGTTAGAACACTTAATGGTGCCAATGTTCTGCT 221951 Query 53805 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCT 53864 | || || || ||| || |||||||| || || || | || || ||||| | || Sbjct 221952 GGTTGCTTTTGCGGTTGCATGCATCCTTGTACAGCATATACGGTACGCCCGTTTCCACCT 222011 Query 53865 GGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTAT-TATAGATTTGTATCTCTTT 53923 | ||||| || ||||| ||| | | | ||||| | | || | | | | Sbjct 222012 GCGATTCAATGATCGCGAACCACAAATCCTGTGCCTTCACCTGGCGAATAAAACGACCCT 222071 Query 53924 TCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCA 53983 || | ||||| || |||| | || |||| || ||||| || ||| || Sbjct 222072 -CTTTCTCGTAGCCAGTGTACAGTGCCTCGAACTTTTCACCCCAGCTATCAGACAAACCG 222130 Query 53984 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 54043 ||||| || | || ||||| | |||| | ||| ||| ||| || | ||| || Sbjct 222131 GGACAATCGTGAGGGCACATTAGACTCCACATTTCGTTCGCCTCCACCCGCTCCATGAAC 222190 Query 54044 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT---TCCTCGTTTCCT 54100 ||||| |||||||| | || |||| | || || || | | | ||||| || || Sbjct 222191 AGATCCGGAATCCACAAGGCG-TAAA-ACATGTCGCGTGC-ACGCACCTCCTCTTTGCCG 222247 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 || || || || ||||| || ||| | | | |||| ||||||||||| | ||| ||| Sbjct 222248 GTGTTTTTCTTCAGATCCAGAAACTCGAACACATCACCGTGCCACGGTTCGAGGTAGATG 222307 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | | |||| || || ||||| || |||||||| | ||||| || || || || || Sbjct 222308 GCAAAAGCTCCCGGGCGCTTGTTGCCACCCTGATCCACGTATCGGGCCGTATTGTTGTAC 222367 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 || | || |||||| | | || || || ||||| || || ||||| || | || Sbjct 222368 ACGCGCAGCATTGGCACCAACCCGTTTGAAATTCCATTCGTGCCCGAGATGTACGTACCT 222427 Query 54281 CTGGCACGAATATTACTAATTGAT-AGACCTATCCCCCCTGCCATTTTAGAGATTAATGC 54339 | || |||||| | | | | || || || || || || ||| || || | ||| Sbjct 222428 TTCGCGCGAATAC-AGTGCACGTTCAGCCCAATTCCGCCAGCAGATTTTGAAATCAGTGC 222486 Query 54340 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 54399 || | || | |||||| ||||| || || || || || ||| |||| | || | || Sbjct 222487 ACACTGCTTCAGCGTATCGTAGATACCTTCAATGCTGTCGTCCGACATGGTGAGCAAGAA 222546 Query 54400 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 54459 |||| |||| || |||| || |||| ||| | ||| || || || || || Sbjct 222547 ACAGGACGACAACTGCGGACGTTGCGTAGCCGCCGCAAACATGGTCGGTGAGGCATGGGT 222606 Query 54460 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATG 54519 ||| | || ||||| |||||||| |||||||| |||| || || || ||| Sbjct 222607 AAAGTAGCGCTCCGAAAGCAGATTGTAAGTCTCGATTGCTGCATCGATGTCTTCACCATG 222666 Query 54520 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 54579 ||| || | || || ||||| ||||| ||||| |||| |||||||||||| || || Sbjct 222667 AATGCCGATCGCAACGCGCATCAACATATGCTGCGGTCGCTCAACGATCTTGCCCTTGAT 222726 Query 54580 TTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 54639 |||| ||||||||| || |||||||| || || ||||||||||| ||| || || Sbjct 222727 CTTCAACAAGTAGGACCGCTCTAAAGTTTTGAAGCCGAAATAGTTGTACCCAAAATCGCG 222786 Query 54640 TTCGTAAATAATAACTGAGTTGAG 54663 || ||||| ||| | || || || Sbjct 222787 ATCATAAATTATAGCCGAATTCAG 222810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593711269244160