Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq872 365 5e-96
>seq872
Length=887634
Score = 365 bits (404), Expect = 5e-96
Identities = 1222/1884 (65%), Gaps = 32/1884 (2%)
Strand=Plus/Plus
Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858
||||||| || ||||| |||| | || ||||| || || || |||||||| |||
Sbjct 220940 TTGTCCACCGTAAATTGGATGGCATTTACGGCCGGTTTGGTGCGCAGGTAGTACATGCCC 220999
Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918
|| ||||| || | |||| |||| ||||| || || || ||| ||| ||||
Sbjct 221000 GTCTTTAGTCCCATCTTCCACGCGTAGAAATGGATCGACGTCAGCTTGCCATAGTTCGGC 221059
Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978
|| || | || || || | ||||| |||||||| || ||||||| || || |||
Sbjct 221060 TCGGCCACGTGTATGTTAAATGATTGTGACTGATCGATAAACGCTCCCCGATCGGCCGCC 221119
Query 52979 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 53037
||||| ||| || || | || ||||| | || || || | |||| | | |
Sbjct 221120 ATTTTGATGGATGTTTTCACCGAGATCTCCCATACCGTCTTGTACAGGTCGCGGATTTCC 221179
Query 53038 TTCTGGAAGGTTTGTAT--TCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATC 53095
|| | | | || || | ||||| ||||| | || || | ||||| ||
Sbjct 221180 TTTGGTATTGATTCAATGTTTTGAATCGATCCGTTGTTGGACAAGATGTTGTTCTTCATG 221239
Query 53096 TCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGA 53155
||| || ||| || || | |||| | || || ||||| | || || || ||
Sbjct 221240 TCAAGATCCCACAAACCCATCGCTGTTAGATCTTGCAGCAGATGATGGTTCACCACCTGG 221299
Query 53156 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCA 53215
|| || || || | || | || |||||| || || ||||| || | ||||||
Sbjct 221300 AACTCGCCCGATAGCACACGTCGGTTGTAAACGTTCGACGTGTACGGCTCGAAGGACTCA 221359
Query 53216 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTT 53275
|| || ||||| ||||| || || || || |||||||| ||||||| || || ||
Sbjct 221360 TTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCATCGGTGCCAGCAGTAGCGAGTTA 221419
Query 53276 CTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGT 53335
| || ||||| || || || || || | | ||| ||||| ||||||| ||||
Sbjct 221420 CGAATACCGTGCTTTGCAATCTTCTCCTTCAACTCTGTCCAGTTCCACAGATCCGTCGGT 221479
Query 53336 ACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGT 53394
| ||||| | ||| || || | | || | ||| |||| ||
Sbjct 221480 TCTTTGTTCCACATTTCGTACTGTAGGACACCCTTGCTCACTGGACAA-CCTTCATACGT 221538
Query 53395 ATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAAT 53454
|||||||| || ||| |||| | ||| || || || || | ||| || || || ||
Sbjct 221539 CTCGTATGGACCGTCCCGTGCAGCCAATTCGCAGCTTGCTTCCAGTGCTCCATAGTAGAT 221598
Query 53455 GGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAA 53514
|||||| || || | | ||| || | ||| || || ||| || ||||||| |
Sbjct 221599 GGTTTCAAATATTTGTTGATTCAGCTTTTGGGCCTCTTCGCTTTCGTATGGATAGCGCAT 221658
Query 53515 GAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 53574
| ||| ||||| || || | || || ||||| |||||||| || || || | | | ||
Sbjct 221659 TAAAATGAACGCATCGGCCATGCCCTGCACACCGATACCGATGGGCCTGTGGCGCATGTT 221718
Query 53575 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTC- 53633
|| | || || || | ||||| || || || || || ||||| || || || |
Sbjct 221719 GGAACGCTTCGCCTCCGGCACCGGATAGTAGTTTATGTCGATGATTTTGTTCAGATTGCG 221778
Query 53634 TGACAATTACT---TTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCC-ATC---T 53686
|| ||||| ||| | ||||||||||| || | ||||| | |||| ||| |
Sbjct 221779 TG----TTACTATCTTGGCGACATCCTTCAGCTTTACGAAATCGTAC-GTCCTATCGGAT 221833
Query 53687 ATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATC- 53745
|||| |||||||||| ||| || || |||||||| ||||| || | |||| | ||
Sbjct 221834 TTTACGAACATGTTCAGTGCGATCGAGGCCAGATTGCAAACCGCAATTTCATC--CTTCG 221891
Query 53746 -CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 53804
|| || | | ||||||||||| | ||| |||||| ||||| || | || || |
Sbjct 221892 ACGAGTACTCCACAATCTCAGTGCACAAGTTAGAACACTTAATGGTGCCAATGTTCTGCT 221951
Query 53805 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCT 53864
| || || || ||| || |||||||| || || || | || || ||||| | ||
Sbjct 221952 GGTTGCTTTTGCGGTTGCATGCATCCTTGTACAGCATATACGGTACGCCCGTTTCCACCT 222011
Query 53865 GGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTAT-TATAGATTTGTATCTCTTT 53923
| ||||| || ||||| ||| | | | ||||| | | || | | | |
Sbjct 222012 GCGATTCAATGATCGCGAACCACAAATCCTGTGCCTTCACCTGGCGAATAAAACGACCCT 222071
Query 53924 TCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCA 53983
|| | ||||| || |||| | || |||| || ||||| || ||| ||
Sbjct 222072 -CTTTCTCGTAGCCAGTGTACAGTGCCTCGAACTTTTCACCCCAGCTATCAGACAAACCG 222130
Query 53984 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 54043
||||| || | || ||||| | |||| | ||| ||| ||| || | ||| ||
Sbjct 222131 GGACAATCGTGAGGGCACATTAGACTCCACATTTCGTTCGCCTCCACCCGCTCCATGAAC 222190
Query 54044 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT---TCCTCGTTTCCT 54100
||||| |||||||| | || |||| | || || || | | | ||||| || ||
Sbjct 222191 AGATCCGGAATCCACAAGGCG-TAAA-ACATGTCGCGTGC-ACGCACCTCCTCTTTGCCG 222247
Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160
|| || || || ||||| || ||| | | | |||| ||||||||||| | ||| |||
Sbjct 222248 GTGTTTTTCTTCAGATCCAGAAACTCGAACACATCACCGTGCCACGGTTCGAGGTAGATG 222307
Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220
| | | |||| || || ||||| || |||||||| | ||||| || || || || ||
Sbjct 222308 GCAAAAGCTCCCGGGCGCTTGTTGCCACCCTGATCCACGTATCGGGCCGTATTGTTGTAC 222367
Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280
|| | || |||||| | | || || || ||||| || || ||||| || | ||
Sbjct 222368 ACGCGCAGCATTGGCACCAACCCGTTTGAAATTCCATTCGTGCCCGAGATGTACGTACCT 222427
Query 54281 CTGGCACGAATATTACTAATTGAT-AGACCTATCCCCCCTGCCATTTTAGAGATTAATGC 54339
| || |||||| | | | | || || || || || || ||| || || | |||
Sbjct 222428 TTCGCGCGAATAC-AGTGCACGTTCAGCCCAATTCCGCCAGCAGATTTTGAAATCAGTGC 222486
Query 54340 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 54399
|| | || | |||||| ||||| || || || || || ||| |||| | || | ||
Sbjct 222487 ACACTGCTTCAGCGTATCGTAGATACCTTCAATGCTGTCGTCCGACATGGTGAGCAAGAA 222546
Query 54400 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 54459
|||| |||| || |||| || |||| ||| | ||| || || || || ||
Sbjct 222547 ACAGGACGACAACTGCGGACGTTGCGTAGCCGCCGCAAACATGGTCGGTGAGGCATGGGT 222606
Query 54460 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATG 54519
||| | || ||||| |||||||| |||||||| |||| || || || |||
Sbjct 222607 AAAGTAGCGCTCCGAAAGCAGATTGTAAGTCTCGATTGCTGCATCGATGTCTTCACCATG 222666
Query 54520 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 54579
||| || | || || ||||| ||||| ||||| |||| |||||||||||| || ||
Sbjct 222667 AATGCCGATCGCAACGCGCATCAACATATGCTGCGGTCGCTCAACGATCTTGCCCTTGAT 222726
Query 54580 TTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 54639
|||| ||||||||| || |||||||| || || ||||||||||| ||| || ||
Sbjct 222727 CTTCAACAAGTAGGACCGCTCTAAAGTTTTGAAGCCGAAATAGTTGTACCCAAAATCGCG 222786
Query 54640 TTCGTAAATAATAACTGAGTTGAG 54663
|| ||||| ||| | || || ||
Sbjct 222787 ATCATAAATTATAGCCGAATTCAG 222810
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593711269244160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |