Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_001623.1
Length=133894
Score E
Sequences producing significant alignments: (Bits) Value
seq672 89.7 4e-13
seq949 82.4 7e-11
>seq672
Length=1102954
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
||||| || ||| | |||||| | || ||||| ||||| || || || || |
Sbjct 391803 ATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTCG 391744
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| ||| | | || | ||| ||| ||| ||||| ||||| | ||| ||||||
Sbjct 391743 GACACGATCGAAAATGTGAAGGCAAAGATTCAGGATAAGGAAGGAATTCCCCCAGATCAG 391684
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
|| | || ||||| || || || || ||||| ||| | ||| || | || |||||
Sbjct 391683 CAGCGTCTCATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGCACTCTGTCGGACTACAAC 391624
Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
||||||||||||||||| ||||| ||||| | ||| | || || ||
Sbjct 391623 ATTCAGAAGGAATCTACCCTTCATCTGGTGCTGCGACTTCGTGGTGG 391577
>seq949
Length=1771395
Score = 82.4 bits (90), Expect = 7e-11
Identities = 173/257 (67%), Gaps = 1/257 (0%)
Strand=Plus/Minus
Query 28935 TTGTCATTTATAAGTAATAGTGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAA 28994
||||| ||| || || ||| |||||||||| || ||| |||| || | || || ||
Sbjct 446922 TTGTCTTTT-TATCCAACAGTATAAAAATGCAGATCTTCGTCAAGACTCTAACTGGAAAG 446864
Query 28995 ACCATTACCGCCGAAACGGAACCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCC 29054
|| || ||| || || || | || || | | || ||||| || |||
Sbjct 446863 ACGATCACCCTGGAGGTTGAGCCATCCGATACCATCGAGAATGTTAAGGCCAAGATTCAG 446804
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
||||| || || | || |||||| || | || |||||||| ||||| || |||||
Sbjct 446803 GATAAGGAGGGAATCCCACCAGATCAGCAGCGTCTGATCTTTGCTGGCAAGCAGTTGGAA 446744
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174
||| | || || | || |||||||||||||||||||| ||||| || |||| |
Sbjct 446743 GATGGCCGTACGCTGTCGGACTACAATATTCAGAAGGAATCGACTCTCCATCTGGTCCTT 446684
Query 29175 CGATTACGAGGAGGGTA 29191
|| |||| || || ||
Sbjct 446683 CGTCTACGTGGTGGATA 446667
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428328733279760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |