Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq672 89.7 4e-13 seq949 82.4 7e-11 >seq672 Length=1102954 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | |||||| | || ||||| ||||| || || || || | Sbjct 391803 ATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTCG 391744 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | || | ||| ||| ||| ||||| ||||| | ||| |||||| Sbjct 391743 GACACGATCGAAAATGTGAAGGCAAAGATTCAGGATAAGGAAGGAATTCCCCCAGATCAG 391684 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | || ||||| || || || || ||||| ||| | ||| || | || ||||| Sbjct 391683 CAGCGTCTCATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGCACTCTGTCGGACTACAAC 391624 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||||||||||| ||||| ||||| | ||| | || || || Sbjct 391623 ATTCAGAAGGAATCTACCCTTCATCTGGTGCTGCGACTTCGTGGTGG 391577 >seq949 Length=1771395 Score = 82.4 bits (90), Expect = 7e-11 Identities = 173/257 (67%), Gaps = 1/257 (0%) Strand=Plus/Minus Query 28935 TTGTCATTTATAAGTAATAGTGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAA 28994 ||||| ||| || || ||| |||||||||| || ||| |||| || | || || || Sbjct 446922 TTGTCTTTT-TATCCAACAGTATAAAAATGCAGATCTTCGTCAAGACTCTAACTGGAAAG 446864 Query 28995 ACCATTACCGCCGAAACGGAACCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCC 29054 || || ||| || || || | || || | | || ||||| || ||| Sbjct 446863 ACGATCACCCTGGAGGTTGAGCCATCCGATACCATCGAGAATGTTAAGGCCAAGATTCAG 446804 Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| || || | || |||||| || | || |||||||| ||||| || ||||| Sbjct 446803 GATAAGGAGGGAATCCCACCAGATCAGCAGCGTCTGATCTTTGCTGGCAAGCAGTTGGAA 446744 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | || || | || |||||||||||||||||||| ||||| || |||| | Sbjct 446743 GATGGCCGTACGCTGTCGGACTACAATATTCAGAAGGAATCGACTCTCCATCTGGTCCTT 446684 Query 29175 CGATTACGAGGAGGGTA 29191 || |||| || || || Sbjct 446683 CGTCTACGTGGTGGATA 446667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428328733279760