Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq628 208 8e-49 seq672 123 3e-23 seq575 107 2e-18 >seq628 Length=1452984 Score = 208 bits (230), Expect = 8e-49 Identities = 310/440 (70%), Gaps = 0/440 (0%) Strand=Plus/Minus Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 |||| || || || || ||| |||||||||| || |||||||||| ||||| ||| || Sbjct 708429 TGTTCAATGCAATTGAAACGCTGCCGTGCGTGAAGAAGAAGGCCGATTGGGCACTGAACT 708370 Query 117006 GGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065 ||||| | ||| |||| ||| |||||||| | || || || || || ||||| | Sbjct 708369 GGATCTCAAGCAAGAAGGCAAACTTTGGCGAGCGTGTCGTCGCGTTTGCTGCTGTCGAAG 708310 Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125 | ||||||| || || || |||||||| || ||||| ||||| || || || |||| Sbjct 708309 GTATCTTCTTCAGCGGTAGCTTTGCCGCCATTTTCTGGCTGAAGAAGCGTGGACTGATGC 708250 Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTG 117185 | || || || ||| |||||||| || || | || || || || || || ||||||| Sbjct 708249 CGGGACTTACCTTCTCGAACGAGCTGATTTCGCGTGATGAAGGACTACACTGTGACTTTG 708190 Query 117186 CCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCG 117245 |||| || |||| ||| || |||| ||| ||| || |||||| | || ||| Sbjct 708189 CCTGCCTGATGTTTAAGTATCTGGTACAGAAACCTTCGAAGGAGCGCGTGACGGCCATCA 708130 Query 117246 TCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGC 117305 || || ||||| || ||||||||| || | || |||| ||||| || | ||| Sbjct 708129 TCCGTGATGCGGTTGCAATCGAGCAGGAATTTTTGACGAAAGCACTGCCAGTCGATATGC 708070 Query 117306 TGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGC 117365 | || | || ||||| |||||| || ||||| |||||||| ||||| | ||||| Sbjct 708069 TCGGTATGAACTGCGATCTGATGTCACAGTACATTGAGTTCGTAGCCGATCGTTTGCTGT 708010 Query 117366 TCGAGCTGGTCGGCGCCAAG 117385 | ||| ||| | | | |||| Sbjct 708009 TGGAGTTGGGCTGTGACAAG 707990 Score = 196 bits (216), Expect = 5e-45 Identities = 201/263 (76%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| || || |||||||||||||| || |||||||| ||||||||||||| || |||| Sbjct 708794 AGGCGGAAGCTTCGTTCTGGACCGTGGAAGAGGTGGATCTGTCCAAGGACATGAAAGACT 708735 Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774 |||| ||||| | ||| ||||| || ||| |||||| || ||||| || |||| Sbjct 708734 GGGATTCGTTGAAACCGAGCGAACGCCACTTTATCTCGCACGTACTTGCCTTCTTTGCCG 708675 Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGG 116834 | ||| |||||||| ||||| || |||||||| |||||| |||||||| ||||| Sbjct 708674 CATCCGATGGCATCGTGAACGAAAACCTGGTCGAACGTTTCAGCCAGGAGGTACAGGTAA 708615 Query 116835 CCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGT 116894 | || || || || || ||||||||||| || || ||||| || |||||| || |||| Sbjct 708614 CGGAAGCTCGCTGTTTTTACGGCTTTCAAATAGCGATGGAAAATGTGCACAGCGAGATGT 708555 Query 116895 ATTCGACCCTCATCGACACGTAC 116917 | || || |||||||||||| Sbjct 708554 ACTCACTGCTAATCGACACGTAC 708532 >seq672 Length=1102954 Score = 123 bits (136), Expect = 3e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 40682 TCCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCG 40741 || ||| ||||| || ||||| ||||| ||||| ||||| |||||||| | || |||| Sbjct 391811 TCAGAATCATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCG 391752 Query 40742 AAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCG 40801 | | | |||| | ||| | |||| ||| |||| || || || || || ||| Sbjct 391751 AGCCTTCGGACACGATCGAAAATGTGAAGGCAAAGATTCAGGATAAGGAAGGAATTCCCC 391692 Query 40802 CGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 40861 | || ||||| || ||||||| ||| || || |||||||| || | ||||| || | Sbjct 391691 CAGATCAGCAGCGTCTCATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGCACTCTGTCGG 391632 Query 40862 ACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||| |||||||| | || || ||||| ||| |||| Sbjct 391631 ACTACAACATTCAGAAGGAATCTACCCTTCATCTGGTGCTGCG 391589 >seq575 Length=281738 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| |||||||| || || || ||| | || ||||| || | Sbjct 23946 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACTATTACCCTTGAGGTCGAGCCCTCG 24005 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| || || | || || ||||||||||| |||| ||| Sbjct 24006 GATACGATCGAGAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCGCCGGATCAG 24065 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| ||| || || |||||||| || | ||||| || ||||| ||| Sbjct 24066 CAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAGGATGGACGCACACTGTCTGACTATAAC 24125 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || ||||||||| | || || ||||| ||| | ||| || | || || Sbjct 24126 ATTCAGAAGGAGTCGACCCTTCATCTGGTGCTTCGCCTGCGCGGTGG 24172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515210235185920