Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq628 208 8e-49
seq672 123 3e-23
seq575 107 2e-18
>seq628
Length=1452984
Score = 208 bits (230), Expect = 8e-49
Identities = 310/440 (70%), Gaps = 0/440 (0%)
Strand=Plus/Minus
Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005
|||| || || || || ||| |||||||||| || |||||||||| ||||| ||| ||
Sbjct 708429 TGTTCAATGCAATTGAAACGCTGCCGTGCGTGAAGAAGAAGGCCGATTGGGCACTGAACT 708370
Query 117006 GGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065
||||| | ||| |||| ||| |||||||| | || || || || || ||||| |
Sbjct 708369 GGATCTCAAGCAAGAAGGCAAACTTTGGCGAGCGTGTCGTCGCGTTTGCTGCTGTCGAAG 708310
Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125
| ||||||| || || || |||||||| || ||||| ||||| || || || ||||
Sbjct 708309 GTATCTTCTTCAGCGGTAGCTTTGCCGCCATTTTCTGGCTGAAGAAGCGTGGACTGATGC 708250
Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTG 117185
| || || || ||| |||||||| || || | || || || || || || |||||||
Sbjct 708249 CGGGACTTACCTTCTCGAACGAGCTGATTTCGCGTGATGAAGGACTACACTGTGACTTTG 708190
Query 117186 CCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCG 117245
|||| || |||| ||| || |||| ||| ||| || |||||| | || |||
Sbjct 708189 CCTGCCTGATGTTTAAGTATCTGGTACAGAAACCTTCGAAGGAGCGCGTGACGGCCATCA 708130
Query 117246 TCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGC 117305
|| || ||||| || ||||||||| || | || |||| ||||| || | |||
Sbjct 708129 TCCGTGATGCGGTTGCAATCGAGCAGGAATTTTTGACGAAAGCACTGCCAGTCGATATGC 708070
Query 117306 TGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGC 117365
| || | || ||||| |||||| || ||||| |||||||| ||||| | |||||
Sbjct 708069 TCGGTATGAACTGCGATCTGATGTCACAGTACATTGAGTTCGTAGCCGATCGTTTGCTGT 708010
Query 117366 TCGAGCTGGTCGGCGCCAAG 117385
| ||| ||| | | | ||||
Sbjct 708009 TGGAGTTGGGCTGTGACAAG 707990
Score = 196 bits (216), Expect = 5e-45
Identities = 201/263 (76%), Gaps = 0/263 (0%)
Strand=Plus/Minus
Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714
|||| || || |||||||||||||| || |||||||| ||||||||||||| || ||||
Sbjct 708794 AGGCGGAAGCTTCGTTCTGGACCGTGGAAGAGGTGGATCTGTCCAAGGACATGAAAGACT 708735
Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774
|||| ||||| | ||| ||||| || ||| |||||| || ||||| || ||||
Sbjct 708734 GGGATTCGTTGAAACCGAGCGAACGCCACTTTATCTCGCACGTACTTGCCTTCTTTGCCG 708675
Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGG 116834
| ||| |||||||| ||||| || |||||||| |||||| |||||||| |||||
Sbjct 708674 CATCCGATGGCATCGTGAACGAAAACCTGGTCGAACGTTTCAGCCAGGAGGTACAGGTAA 708615
Query 116835 CCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGT 116894
| || || || || || ||||||||||| || || ||||| || |||||| || ||||
Sbjct 708614 CGGAAGCTCGCTGTTTTTACGGCTTTCAAATAGCGATGGAAAATGTGCACAGCGAGATGT 708555
Query 116895 ATTCGACCCTCATCGACACGTAC 116917
| || || ||||||||||||
Sbjct 708554 ACTCACTGCTAATCGACACGTAC 708532
>seq672
Length=1102954
Score = 123 bits (136), Expect = 3e-23
Identities = 161/223 (72%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 40682 TCCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCG 40741
|| ||| ||||| || ||||| ||||| ||||| ||||| |||||||| | || ||||
Sbjct 391811 TCAGAATCATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCG 391752
Query 40742 AAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCG 40801
| | | |||| | ||| | |||| ||| |||| || || || || || |||
Sbjct 391751 AGCCTTCGGACACGATCGAAAATGTGAAGGCAAAGATTCAGGATAAGGAAGGAATTCCCC 391692
Query 40802 CGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 40861
| || ||||| || ||||||| ||| || || |||||||| || | ||||| || |
Sbjct 391691 CAGATCAGCAGCGTCTCATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGCACTCTGTCGG 391632
Query 40862 ACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|||||||||| |||||||| | || || ||||| ||| ||||
Sbjct 391631 ACTACAACATTCAGAAGGAATCTACCCTTCATCTGGTGCTGCG 391589
>seq575
Length=281738
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| ||||| |||||||| || || || ||| | || ||||| || |
Sbjct 23946 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACTATTACCCTTGAGGTCGAGCCCTCG 24005
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | |||| || || | || || ||||||||||| |||| |||
Sbjct 24006 GATACGATCGAGAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCGCCGGATCAG 24065
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || | |||| ||| || || |||||||| || | ||||| || ||||| |||
Sbjct 24066 CAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAGGATGGACGCACACTGTCTGACTATAAC 24125
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|| ||||||||| | || || ||||| ||| | ||| || | || ||
Sbjct 24126 ATTCAGAAGGAGTCGACCCTTCATCTGGTGCTTCGCCTGCGCGGTGG 24172
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515210235185920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |