Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq628 120 5e-22
seq497 116 6e-21
>seq628
Length=1452984
Score = 120 bits (132), Expect = 5e-22
Identities = 307/472 (65%), Gaps = 14/472 (3%)
Strand=Plus/Minus
Query 202765 AAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTTACCAAATATTGGTCTTTC 202824
||||||||| | ||||||||||| |||| || |||||||| || || ||| | ||
Sbjct 270817 AAATTTACGCTTGCATCCTTCATAGTTCATGTACCTAATTTTGCCGAAAATTTCACGCTC 270758
Query 202825 TTTCCATGCTCTATCATGAATACCACAAATTGACCACATACATCCAACATATCCATTTGG 202884
|||||| | ||| ||||| || ||| |||||||| || || || || || || ||
Sbjct 270757 CTTCCATCCCTGATCGTGAATGCCCGCAATCGACCACATGCAACCGACGTAACCGTTCGG 270698
Query 202885 ATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNNNNNNNNAATGCTTCTTC 202944
||| |||||||| | | || ||| || | || | ||||| ||
Sbjct 270697 ATCGCGTCCATCCAGACTGTACCGATCGTTCAGATAGATGGCCGTTTCAAGCGCTTCCTC 270638
Query 202945 TGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATTCTTAAATATCCATGCAT 203004
|| | ||||||||| || | ||| ||||| ||||| ||||| |||| | | || |||||
Sbjct 270637 GGGCGTTTTTGTCCACTCGAGTATCTTTTTGGCCCAGTACATCCTTAGAAAGCCGTGCAT 270578
Query 203005 TTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAAATTGTCATGAGTTAATGC 203064
|||||| | | | ||| || || | | ||||| | || ||| || ||| ||
Sbjct 270577 TTTACCCTCCTTTACCATCTGCAGCTGGGCCGAGTTCCAAAGATCGTCGTGCGTTTTGGC 270518
Query 203065 ATTTTCAAG-------TTGATATAAACTATATATATGTTTTCTAGTATCATTTTTATGTT 203117
|||| || || | | | | || | | ||| |||| || ||| |
Sbjct 270517 CGTTTCCAGCTCGTCCCTGCTGT-AGCAGTACACACGTT------TATCCTTCCGATGAT 270465
Query 203118 CATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTATATTATCGTAATTTTCATTAT 203177
| ||||||||||| ||||| | | ||||| || | ||| ||||| ||||| || |
Sbjct 270464 CGTTTAGTGTTTTGCGGGCCCATTCGTACGCACCCTTCAGATTGTCGTAGTTTTCGTTGT 270405
Query 203178 AATAACAAAAATTATCACATAGTTCTTTACGAATAATAGCTTCTTCACAAAA 203229
| | |||||||| || | ||||| || | || ||||| || |||||
Sbjct 270404 GAAAGCAAAAATTGTCCGACAGTTCGCGGCGTACGATCGCTTCCTCGCAAAA 270353
>seq497
Length=402095
Score = 116 bits (128), Expect = 6e-21
Identities = 239/348 (69%), Gaps = 13/348 (4%)
Strand=Plus/Minus
Query 205443 AGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACC 205502
||| | ||| || ||||||| |||| ||| || ||||||| ||||| || |||||
Sbjct 124263 AGTAACATGGGCGATCATATGGGTCAGCAAAGAGTAGCTAGCAATGTTAAACGGAACACC 124204
Query 205503 TAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATTAC 205562
|| || | |||||| |||| |||||||| || || | | | | ||| || |
Sbjct 124203 CAATCCTACATCAGCCGATCGCTGATACATCTGGCAAGACAACTCTCCATTGCCAA---C 124147
Query 205563 ATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATT 205622
| ||| ||| | || || ||||| || |||| |||| || || ||| ||||||
Sbjct 124146 AAAAAACTGTGCCAAGCAGTGACACGGCGGTAAGGCCATGTTGGGAATATCGGAAGGATT 124087
Query 205623 CCAGGCTGTTAATATTATATTTCTA-GAT--TCAGGtttattttttattttatttatAAT 205679
||| || | | || || || | ||| | ||| || ||||||||||| | ||| |
Sbjct 124086 CCAAGCGCTCATGATGAT---TCGACGATCGTAAGGATTGTTTTTTATTTTGTGTATCAC 124030
Query 205680 ATGTGTTAATTGATCAAATCCTTGATTTGTATAAT--TTGTATCCATATCAATATATTTA 205737
| || || || || | ||| || ||| |||| | || | || | | |||||
Sbjct 124029 TTCTGCCAACTGGTCGATTCCCTGTCCTGTGTAATCGTCGTGGC-ATGTTT-TGTATTTT 123972
Query 205738 GCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCT 205785
|||||||| |||||||| ||||| ||||||||||||||||| ||||||
Sbjct 123971 GCACCAAAGTGACGCCACTGAAAGCCATAAACTGGACCTAAGTCACCT 123924
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755442855065600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |