Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq628 120 5e-22 seq497 116 6e-21 >seq628 Length=1452984 Score = 120 bits (132), Expect = 5e-22 Identities = 307/472 (65%), Gaps = 14/472 (3%) Strand=Plus/Minus Query 202765 AAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTTACCAAATATTGGTCTTTC 202824 ||||||||| | ||||||||||| |||| || |||||||| || || ||| | || Sbjct 270817 AAATTTACGCTTGCATCCTTCATAGTTCATGTACCTAATTTTGCCGAAAATTTCACGCTC 270758 Query 202825 TTTCCATGCTCTATCATGAATACCACAAATTGACCACATACATCCAACATATCCATTTGG 202884 |||||| | ||| ||||| || ||| |||||||| || || || || || || || Sbjct 270757 CTTCCATCCCTGATCGTGAATGCCCGCAATCGACCACATGCAACCGACGTAACCGTTCGG 270698 Query 202885 ATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNNNNNNNNAATGCTTCTTC 202944 ||| |||||||| | | || ||| || | || | ||||| || Sbjct 270697 ATCGCGTCCATCCAGACTGTACCGATCGTTCAGATAGATGGCCGTTTCAAGCGCTTCCTC 270638 Query 202945 TGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATTCTTAAATATCCATGCAT 203004 || | ||||||||| || | ||| ||||| ||||| ||||| |||| | | || ||||| Sbjct 270637 GGGCGTTTTTGTCCACTCGAGTATCTTTTTGGCCCAGTACATCCTTAGAAAGCCGTGCAT 270578 Query 203005 TTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAAATTGTCATGAGTTAATGC 203064 |||||| | | | ||| || || | | ||||| | || ||| || ||| || Sbjct 270577 TTTACCCTCCTTTACCATCTGCAGCTGGGCCGAGTTCCAAAGATCGTCGTGCGTTTTGGC 270518 Query 203065 ATTTTCAAG-------TTGATATAAACTATATATATGTTTTCTAGTATCATTTTTATGTT 203117 |||| || || | | | | || | | ||| |||| || ||| | Sbjct 270517 CGTTTCCAGCTCGTCCCTGCTGT-AGCAGTACACACGTT------TATCCTTCCGATGAT 270465 Query 203118 CATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTATATTATCGTAATTTTCATTAT 203177 | ||||||||||| ||||| | | ||||| || | ||| ||||| ||||| || | Sbjct 270464 CGTTTAGTGTTTTGCGGGCCCATTCGTACGCACCCTTCAGATTGTCGTAGTTTTCGTTGT 270405 Query 203178 AATAACAAAAATTATCACATAGTTCTTTACGAATAATAGCTTCTTCACAAAA 203229 | | |||||||| || | ||||| || | || ||||| || ||||| Sbjct 270404 GAAAGCAAAAATTGTCCGACAGTTCGCGGCGTACGATCGCTTCCTCGCAAAA 270353 >seq497 Length=402095 Score = 116 bits (128), Expect = 6e-21 Identities = 239/348 (69%), Gaps = 13/348 (4%) Strand=Plus/Minus Query 205443 AGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACC 205502 ||| | ||| || ||||||| |||| ||| || ||||||| ||||| || ||||| Sbjct 124263 AGTAACATGGGCGATCATATGGGTCAGCAAAGAGTAGCTAGCAATGTTAAACGGAACACC 124204 Query 205503 TAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATTAC 205562 || || | |||||| |||| |||||||| || || | | | | ||| || | Sbjct 124203 CAATCCTACATCAGCCGATCGCTGATACATCTGGCAAGACAACTCTCCATTGCCAA---C 124147 Query 205563 ATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATT 205622 | ||| ||| | || || ||||| || |||| |||| || || ||| |||||| Sbjct 124146 AAAAAACTGTGCCAAGCAGTGACACGGCGGTAAGGCCATGTTGGGAATATCGGAAGGATT 124087 Query 205623 CCAGGCTGTTAATATTATATTTCTA-GAT--TCAGGtttattttttattttatttatAAT 205679 ||| || | | || || || | ||| | ||| || ||||||||||| | ||| | Sbjct 124086 CCAAGCGCTCATGATGAT---TCGACGATCGTAAGGATTGTTTTTTATTTTGTGTATCAC 124030 Query 205680 ATGTGTTAATTGATCAAATCCTTGATTTGTATAAT--TTGTATCCATATCAATATATTTA 205737 | || || || || | ||| || ||| |||| | || | || | | ||||| Sbjct 124029 TTCTGCCAACTGGTCGATTCCCTGTCCTGTGTAATCGTCGTGGC-ATGTTT-TGTATTTT 123972 Query 205738 GCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCT 205785 |||||||| |||||||| ||||| ||||||||||||||||| |||||| Sbjct 123971 GCACCAAAGTGACGCCACTGAAAGCCATAAACTGGACCTAAGTCACCT 123924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755442855065600