Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq672 145 7e-30 seq575 105 6e-18 seq949 93.3 4e-14 >seq672 Length=1102954 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || || ||||| || | ||||| || || ||||||||||| || Sbjct 391575 TACCACCACGAAGTCGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCG 391634 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || |||||| |||||| ||||| || || ||| ||||||||||||||||||| || | Sbjct 391635 ACAGAGTGCGGCCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGGG 391694 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||| || ||| ||| || || | ||||| ||||||| ||||| Sbjct 391695 GAATTCCTTCCTTATCCTGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGA 391754 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| | || | || |||||||| || ||||| || |||||||||||| Sbjct 391755 CCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATG 391804 >seq575 Length=281738 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| ||||| | | | ||||| || | || ||||| || |||||||| || || Sbjct 24173 ACCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGA 24114 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||||| |||||| ||||| || || ||| |||| | |||||||||||| || || Sbjct 24113 CAGTGTGCGTCCATCCTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCCGGCGG 24054 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 ||||||||||| || || || || || | |||| || |||| | |||||| Sbjct 24053 GATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 23994 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | ||| | || || || || || ||||| || || |||||||| Sbjct 23993 CTCAAGGGTAATAGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 23946 >seq949 Length=1771395 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| |||| || || || || ||||| ||||| || || || || ||| || Sbjct 446688 ACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAGTCCGACAGCGTACGGCCATCTTCC 446747 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||| || ||||| |||| |||||||||||||| || || || |||||||| || | Sbjct 446748 AACTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTATCCTGA 446807 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||||| | |||| ||| || | ||| ||||| | ||| | ||| || Sbjct 446808 ATCTTGGCCTTAACATTCTCGATGGTATCGGATGGCTCAACCTCCAGGGTGATCGTCTTT 446867 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || ||||| || || || |||||||| Sbjct 446868 CCAGTTAGAGTCTTGACGAAGATCTGCAT 446896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433823040067264