Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq691 105 8e-18
seq517 105 8e-18
seq472 105 8e-18
seq14 102 9e-17
seq335 98.7 1e-15
seq522 96.9 4e-15
seq456 96.9 4e-15
seq1 96.9 4e-15
seq672 86.0 7e-12
seq949 82.4 9e-11
>seq691
Length=97490
Score = 105 bits (116), Expect = 8e-18
Identities = 72/81 (89%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||||| ||||||| || | ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 47178 AAAAAGTTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 47119
Query 60117 TCACCACTATACTACCGAGGA 60137
| |||||||||||| ||||||
Sbjct 47118 TGACCACTATACTATCGAGGA 47098
>seq517
Length=1261231
Score = 105 bits (116), Expect = 8e-18
Identities = 72/81 (89%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||||| ||||||| || | ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1167808 AAAAACTTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1167749
Query 60117 TCACCACTATACTACCGAGGA 60137
| |||||||||||| ||||||
Sbjct 1167748 TGACCACTATACTATCGAGGA 1167728
>seq472
Length=1835194
Score = 105 bits (116), Expect = 8e-18
Identities = 72/81 (89%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||||| ||||||| || | ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1323140 AAAAACTTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1323081
Query 60117 TCACCACTATACTACCGAGGA 60137
| |||||||||||| ||||||
Sbjct 1323080 TGACCACTATACTATCGAGGA 1323060
Score = 102 bits (112), Expect = 9e-17
Identities = 73/83 (88%), Gaps = 1/83 (1%)
Strand=Plus/Plus
Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115
|||| ||||| ||| || | ||||||||||||| ||||||||||||||||||||| |||
Sbjct 1480062 AAAACTTTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 1480121
Query 60116 CTCACCACTATACTACCGAGGAT 60138
|| |||||||||||| |||||||
Sbjct 1480122 CTGACCACTATACTATCGAGGAT 1480144
>seq14
Length=602066
Score = 102 bits (112), Expect = 9e-17
Identities = 71/81 (88%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
|||||| ||||| || | ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 539303 AAAAATCCTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 539362
Query 60117 TCACCACTATACTACCGAGGA 60137
| |||||||||||| ||||||
Sbjct 539363 TGACCACTATACTATCGAGGA 539383
Score = 102 bits (112), Expect = 9e-17
Identities = 73/83 (88%), Gaps = 1/83 (1%)
Strand=Plus/Plus
Query 60057 AAAAATTT-TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115
||||||| ||||| || | ||||||||||||| ||||||||||||||||||||| |||
Sbjct 539763 AAAAATTCCTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 539822
Query 60116 CTCACCACTATACTACCGAGGAT 60138
|| |||||||||||| |||||||
Sbjct 539823 CTGACCACTATACTATCGAGGAT 539845
Score = 98.7 bits (108), Expect = 1e-15
Identities = 72/83 (87%), Gaps = 2/83 (2%)
Strand=Plus/Minus
Query 60057 AAAAATTT--TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114
||||| || ||||| || | ||||||||||||| ||||||||||||||||||||| ||
Sbjct 540068 AAAAAGTTCCTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 540009
Query 60115 ACTCACCACTATACTACCGAGGA 60137
||| |||||||||||| ||||||
Sbjct 540008 ACTGACCACTATACTATCGAGGA 539986
>seq335
Length=1493947
Score = 98.7 bits (108), Expect = 1e-15
Identities = 72/83 (87%), Gaps = 2/83 (2%)
Strand=Plus/Minus
Query 60057 AAAAATTT--TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114
||| |||| ||||| || | ||||||||||||| ||||||||||||||||||||| ||
Sbjct 295449 AAAGATTTCCTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 295390
Query 60115 ACTCACCACTATACTACCGAGGA 60137
||| |||||||||||| ||||||
Sbjct 295389 ACTGACCACTATACTATCGAGGA 295367
>seq522
Length=317854
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121
||| |||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||
Sbjct 260746 TTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACC 260805
Query 60122 ACTATACTACCGAGGA 60137
||||||||| ||||||
Sbjct 260806 ACTATACTATCGAGGA 260821
>seq456
Length=439401
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 391959 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 392018
Query 60126 TACTACCGAGGAT 60138
||||| |||||||
Sbjct 392019 TACTATCGAGGAT 392031
Score = 96.9 bits (106), Expect = 4e-15
Identities = 69/78 (88%), Gaps = 1/78 (1%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 392759 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 392818
Query 60125 ATACTACCGAGG-ATTGA 60141
|||||| ||||| |||||
Sbjct 392819 ATACTATCGAGGAATTGA 392836
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 393962 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 394021
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 394022 ATACTATCGAGGA 394034
>seq1
Length=3832769
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 3334955 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 3334896
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 3334895 ATACTATCGAGGA 3334883
>seq672
Length=1102954
Score = 86.0 bits (94), Expect = 7e-12
Identities = 150/216 (69%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
|||| ||||| ||| | || ||||| ||||| ||||| || | |||||| || |
Sbjct 391589 CGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGGCCA 391648
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || ||||||||||| ||||| ||||| |||||||| || | || | | |||||
Sbjct 391649 TCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATTCCTTCCTTA 391708
Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
||| ||| | |||| || | | | | |||||| | || || || | |||||
Sbjct 391709 TCC-TGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGAT 391767
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||| ||||| || || || || || || || |||||
Sbjct 391768 GGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 391803
>seq949
Length=1771395
Score = 82.4 bits (90), Expect = 9e-11
Identities = 138/197 (70%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||| ||||||||||| || | ||| || || | || || | |||||| ||||| ||
Sbjct 446706 TCCTTCTGAATATTGTAGTCCGACAGCGTACGGCCATCTTCCAACTGCTTGCCAGCAAAG 446765
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111
|| || |||||||| || | || | | |||||| ||| ||| | || | || | |
Sbjct 446766 ATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTATCC-TGAATCTTGGCCTTAACATT 446824
Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | | || ||| | || || || | ||||| || || || ||||| ||||| ||
Sbjct 446825 CTCGATGGTATCGGATGGCTCAACCTCCAGGGTGATCGTCTTTCCAGTTAGAGTCTTGAC 446884
Query 43172 AAAGATTTGCATTTTTA 43188
||||| ||||||||||
Sbjct 446885 GAAGATCTGCATTTTTA 446901
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571807650373760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |