Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq672 86.0 5e-12 seq949 84.2 2e-11 >seq672 Length=1102954 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||||||||||||||| ||| ||| | || ||||| || || |||||||| Sbjct 391613 TCCTTCTGAATGTTGTAGTCCGACAGAGTGCGGCCATCCTCCAGCTGCTTACCGGCGAAG 391672 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | ||||| || || || || | || ||||| ||| ||| ||| ||| || Sbjct 391673 ATGAGACGCTGCTGATCTGGGGGAATTCCTTCCTTATCCTGAATCTTTGCCTTCACATTT 391732 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | ||||| | ||| ||||| | || || |||||||| || || || ||||| Sbjct 391733 TCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACG 391792 Query 45326 AAGATTTGCATG 45337 || || |||||| Sbjct 391793 AAAATCTGCATG 391804 >seq949 Length=1771395 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||||||||| |||||||| ||| || | || |||| || || || || || Sbjct 446706 TCCTTCTGAATATTGTAGTCCGACAGCGTACGGCCATCTTCCAACTGCTTGCCAGCAAAG 446765 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| ||||| || || || || | |||||||| ||| ||| || |||||| | Sbjct 446766 ATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTATCCTGAATCTTGGCCTTAACATTC 446825 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | | || ||| ||||||| ||| |||||||| || || |||||||| || Sbjct 446826 TCGATGGTATCGGATGGCTCAACCTCCAGGGTGATCGTCTTTCCAGTTAGAGTCTTGACG 446885 Query 45326 AAGATTTGCATGTT 45339 ||||| ||||| || Sbjct 446886 AAGATCTGCATTTT 446899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395068497549232