Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq628 100 3e-16 >seq628 Length=1452984 Score = 100 bits (110), Expect = 3e-16 Identities = 286/440 (65%), Gaps = 0/440 (0%) Strand=Plus/Plus Query 14006 ACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGAC 14065 || || ||||| || | || || || || | ||| || | ||||||||| || || ||| Sbjct 707988 ACCTTGTCACAGCCCAACTCCAACAGCAAACGATCGGCTACGAACTCAATGTACTGTGAC 708047 Query 14066 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTT 14125 || | ||| || |||||||| | | | || || | | || || |||||||| | Sbjct 708048 ATCAGATCGCAGTTCATACCGAGCATATCGACTGGCAGTGCTTTCGTCAAAAATTCCTGC 708107 Query 14126 TCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTT 14185 || || | || || || || || ||| | || || ||||| | | Sbjct 708108 TCGATTGCAACCGCATCACGGATGATGGCCGTCACGCGCTCCTTCGAAGGTTTCTGTACC 708167 Query 14186 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 14245 |||| ||||| || | || ||||| ||||| || || || ||||| | ||| || Sbjct 708168 AGATACTTAAACATCAGGCAGGCAAAGTCACAGTGTAGTCCTTCATCACGCGAAATCAGC 708227 Query 14246 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 14305 ||||| || || || | ||| ||||||| ||| || || || | ||| || || || || Sbjct 708228 TCGTTCGAGAAGGTAAGTCCCGGCATCAGTCCACGCTTCTTCAGCCAGAAAATGGCGGCA 708287 Query 14306 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAAC 14365 || ||| ||||| || || || || ||||||||||| | | || || ||||| Sbjct 708288 AAGCTACCGCTGAAGAAGATACCTTCGACAGCAGCAAACGCGACGACACGCTCGCCAAAG 708347 Query 14366 GATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC 14425 ||| || ||| | || ||||| || ||||| || | || || || | | | Sbjct 708348 TTTGCCTTCTTGCTTGAGATCCAGTTCAGTGCCCAATCGGCCTTCTTCTTCACGCACGGC 708407 Query 14426 ATTGTTTCAATAGCATTAAA 14445 | |||||||| ||||| || Sbjct 708408 AGCGTTTCAATTGCATTGAA 708427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482337207186560