Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq872 892 0.0 seq628 181 9e-41 seq949 116 3e-21 seq672 109 5e-19 seq575 96.9 3e-15 >seq872 Length=887634 Score = 892 bits (988), Expect = 0.0 Identities = 1363/1939 (70%), Gaps = 13/1939 (1%) Strand=Plus/Plus Query 22103 GTCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATG 22162 || |||||||| ||||| || ||||| ||| |||||||||||||||| || || |||||| Sbjct 220937 GTTTTGTCCACCGTAAATTGGATGGCATTTACGGCCGGTTTGGTGCGCAGGTAGTACATG 220996 Query 22163 CCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTC 22222 |||||||| || ||||||||||||||||| ||||| |||||||||| || ||||| || Sbjct 220997 CCCGTCTTTAGTCCCATCTTCCACGCGTAGAAATGGATCGACGTCAGCTTGCCATAGTTC 221056 Query 22223 GGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCG 22282 ||| | ||| || | || || || || |||||||||||||||||| |||||||| Sbjct 221057 GGCTCGGCCACGTGTATGTTAAATGATTGTGACTGATCGATAAACGCTCCCCGATCGGCC 221116 Query 22283 GCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATC 22342 ||||| || || |||| || ||| || |||||||| ||||||||||| | | ||| Sbjct 221117 GCCATTTTGATGGATGTTTTCACCGAGATCTCCCATACCGTCTTGTACAGGTCGCGGATT 221176 Query 22343 TCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTA 22402 || ||||| ||||| || | || | || ||||| ||| | ||| || || Sbjct 221177 TCCTTTGGTATTGATTCAATGTTTTGAATCGATCCGTTGTTGGACAAGATGTTGTTCTTC 221236 Query 22403 ATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACT 22462 || | | ||||||||| || || || | ||||| | ||||||| |||||||||| Sbjct 221237 ATGTCAAGATCCCACAAACCCATCGCTGTTAGATCTTGCAGCAGATGATGGTTCACCACC 221296 Query 22463 TGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGAT 22522 || |||||||| || | || || || | ||||| ||| || ||| |||| ||||| || Sbjct 221297 TGGAACTCGCCCGATAGCACACGTCGGTTGTAAACGTTCGACGTGTACGGCTCGAAGGAC 221356 Query 22523 TCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAG 22582 |||||||| |||| ||| || || |||||||| ||||||||||| |||| |||||||||| Sbjct 221357 TCATTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCATCGGTGCCAGCAGTAGCGAG 221416 Query 22583 TTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGAC 22642 || | | |||||||||| ||| || ||| | | | ||||| ||||||||| | Sbjct 221417 TTACGAATACCGTGCTTTGCAATCTTCTCCTTCAACTCTGTCCAGTTCCACAGATC---C 221473 Query 22643 GGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCG 22702 | || | |||| |||||| ||||| || | || || ||| | || | ||||| Sbjct 221474 GTCGGTTCTTTGTTCCACATTTCGTACTGTAGGACACCCTTGCTCACTGGACAACCTTCA 221533 Query 22703 TACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAA 22762 ||||| ||||| ||||| | || || | ||||||||| || |||| || || || Sbjct 221534 TACGTCTCGTATGGACCGTCCCGTGCAGCCAATTCGCAGCTTGCTTCCAGTGCTCCATAG 221593 Query 22763 TATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATA 22822 || || || || || |||| | |||| | ||| | |||||||||| || ||| Sbjct 221594 TAGATGGTTTCAAATATTTGTTGATTCAGCTTTTGGGCCTCTTCGCTTTCGTATGG-ATA 221652 Query 22823 -CGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTT 22881 ||||| | | |||||| || ||||| ||||| || || |||||||| || | || Sbjct 221653 GCGCATTAAAATGAACGCATCGGCCATGCCCTGCACACCGATACCGATGGGCCTGTGGCG 221712 Query 22882 CAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAA 22941 || || || || ||||| |||| ||||| | || ||||| || |||||| Sbjct 221713 CATGTTGGAACGCTTCGCCTCCGGCACCGGATAGTAGTTTATGTCGATGATTTTGTTCAG 221772 Query 22942 GTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTG 23001 || | || || || || | | | || |||| ||| || || | Sbjct 221773 ATTGCGTGTTACTATCTTGGCGACATCCTTCAGCTTTACGAAATCGT--ACGTCCTATCG 221830 Query 23002 --TACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTG 23059 | || ||| |||| | ||||||||||| |||||||| || || | || || || Sbjct 221831 GATTTTACGAACATGTTCAGTGCGATCGAGGCCAGATTGCAAACCGCAATTTCATCCTTC 221890 Query 23060 GACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTC 23119 |||| |||||| ||||| || || || | || |||||| || ||||| | || | Sbjct 221891 GACGAGTACTCCACAATCTCAGTGCACAAGTTAGAACACTTAATGGTGCCAATGTTCTGC 221950 Query 23120 TGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACC 23179 ||||||||||| || ||||| | ||||||||| ||||| ||||| |||||| || ||| Sbjct 221951 TGGTTGCTTTTGCGGTTGCATGCATCCTTGTACAGCATATACGGTACGCCCGTTTCCACC 222010 Query 23180 TGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCT 23239 ||||| || |||||||| ||||| | ||| || | || | || | | | || Sbjct 222011 TGCGATTCAATGATCGCGAACCACAAATCCTGTGCCTTCACCTGGCGAATAAAACGACCC 222070 Query 23240 TCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCG 23299 |||| |||||| ||||| || || || | |||| | | || | || ||| Sbjct 222071 TCTTTCTCGTAGCCAGTGTACAGTGCCTCGAACTTTTCACCCCAGCTATCAGACAAACCG 222130 Query 23300 GGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAA 23359 || | | || ||||| |||||||||||| || || || || ||| || Sbjct 222131 GGACAATCGTGAGGGCACATTAGACTCCACATTTCGTTCGCCTCCACCCGCTCCATGAAC 222190 Query 23360 AGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTG 23419 |||||||| ||||| | ||||| |||| ||||| || ||||||||||||||||||||| Sbjct 222191 AGATCCGGAATCCACAAGGCGTAAAACATGTCGCGTGCACGCACCTCCTCTTTGCCGGTG 222250 Query 23420 TTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCA 23479 || || |||| ||||| ||| || ||||| || | |||||||| |||||||| | |||| Sbjct 222251 TTTTTCTTCAGATCCAGAAACTCGAACACATCACCGTGCCACGGTTCGAGGTAGATGGCA 222310 Query 23480 AACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACT 23539 || || ||||| | ||| ||||| |||||||| ||||| |||||||| ||||||||||| Sbjct 222311 AAAGCTCCCGGGCGCTTGTTGCCACCCTGATCCACGTATCGGGCCGTATTGTTGTACACG 222370 Query 23540 CTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTT 23599 | ||||| ||||| | ||||| || || ||||| | || |||||| Sbjct 222371 CGCAGCATTGGCACCAACCCGTTTGAAATTCCATTCGTGCCCGAGATGTACGTACCTTTC 222430 Query 23600 GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCAT 23659 || |||| ||| |||| | || || || || | ||||| || |||| || || Sbjct 222431 GCGCGAATACAGTGCACGTTCAGCCCAATTCCGCCAGCAGATTTTGAAATCAGTGCACAC 222490 Query 23660 TGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACAC 23719 || ||||| || |||||||| || || |||||||| || | | || ||||||||| Sbjct 222491 TGCTTCAGCGTATCGTAGATACCTTCAATGCTGTCGTCCGACATGGTGAGCAAGAAACAG 222550 Query 23720 GAAGACATTTGCG--CTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAA 23777 || |||| |||| | || ||||||| |||| |||| ||||| ||| || |||| Sbjct 222551 GACGACAACTGCGGACGTT--GCGTAGCCGCCGCAAACATGGTCGGTGAGGCATGGGTAA 222608 Query 23778 AGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTA 23837 |||| | | ||| | |||||||| || ||||| || ||||| ||||| || || || | Sbjct 222609 AGTAGCGCTCCGAAAGCAGATTGTAAGTCTCGATTGCTGCATCGATGTCTTCACCATGAA 222668 Query 23838 TACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTT 23897 | ||||| || |||||||||| ||| | || |||| ||| || | ||| || || | Sbjct 222669 TGCCGATCGCAACGCGCATCAACATATGCTGCGGTCGCTCAACGATCTTGCCCTTGATCT 222728 Query 23898 TGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGAT 23957 | |||| || || || | | ||||| || || ||||||| || ||| || |||| Sbjct 222729 TCAACAAGTAGGACCGCTCTAAAGTTTTGAAGCCGAAATAGTTGTACCCAAAATCGCGAT 222788 Query 23958 CGTGCACTATGGCCGAATTCAAACGGTACGCATTGGCAGCGATGATGTTGTAATGAAAAT 24017 | | | ||| |||||||||| ||||| ||||||| | || | ||||||||||||| Sbjct 222789 CATAAATTATAGCCGAATTCAGACGGTCCGCATTGTCCATTATCACCTTGTAATGAAAAT 222848 Query 24018 TCGATATCATCGGCGTTTT 24036 || ||||| || | ||| Sbjct 222849 CAGAAATCATGGGAGATTT 222867 >seq628 Length=1452984 Score = 181 bits (200), Expect = 9e-41 Identities = 291/414 (70%), Gaps = 8/414 (2%) Strand=Plus/Minus Query 57879 CTGTTCAACGCGATCGAAACAATGCCC-GCGATCGCCAAGAAGGCAGAGTGGTCAATCAA 57937 |||||||| || || ||||| |||| ||| | |||||||| || ||| || | || Sbjct 708430 CTGTTCAATGCAATTGAAACGCTGCCGTGCG-TGAAGAAGAAGGCCGATTGGGCACTGAA 708372 Query 57938 ATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGA 57997 ||||| |||| | ||| | || | |||| | | ||||||| || || ||||| Sbjct 708371 CTGGATCTCAAGCAAGAAGGCAAACTTTGGCGAGCGTGTCGTCGCGTTTGCTGCTGTCGA 708312 Query 57998 AGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGAT 58057 |||||| ||||| || |||||||| || || || ||| ||||||| || || ||||| Sbjct 708311 AGGTATCTTCTTCAGCGGTAGCTTTGCCGCCATTTTCTGGCTGAAGAAGCGTGGACTGAT 708252 Query 58058 GCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTT 58117 ||| || || || || |||||| |||| ||||| || || || || || ||| || Sbjct 708251 GCCGGGACTTACCTTCTCGAACGAGCTGATTTCGCGTGATGAAGGACTACACTGTGACTT 708192 Query 58118 TGCGTGCCTAATGT---ACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGA 58174 ||| ||||| |||| | | || | || | ||||| || ||| ||| | || Sbjct 708191 TGCCTGCCTGATGTTTAAGTATC---TGGTACAGAAACCTTCGAAGGAGCGCGTGACGGC 708135 Query 58175 CATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGC 58234 ||| ||| || ||||| || ||||| | || ||| | || |||| || || || | Sbjct 708134 CATCATCCGTGATGCGGTTGCAATCGAGCAGGAATTTTTGACGAAAGCACTGCCAGTCGA 708075 Query 58235 CATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGA 58288 ||||||||||||||| ||| |||||||| ||||||||||||| || ||||| Sbjct 708074 TATGCTCGGTATGAACTGCGATCTGATGTCACAGTACATTGAGTTCGTAGCCGA 708021 Score = 145 bits (160), Expect = 7e-30 Identities = 195/269 (72%), Gaps = 12/269 (4%) Strand=Plus/Minus Query 57589 AGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATT 57648 |||| ||||| ||||| |||||||| ||||| || || ||||| ||||| ||| || | Sbjct 708794 AGGCGGAAGCTTCGTTCTGGACCGTGGAAGAGGTGGATCTGTCCAAGGACATGAAAGACT 708735 Query 57649 GGGATTCCCTCAAAGAATCTGAGAGAA----ATTTTATTAAACACGTGTTGGCGTTTTTC 57704 ||||||| | ||| | ||| ||| | ||||| ||||| | || || || Sbjct 708734 GGGATTCGTTGAAA----CCGAGCGAACGCCACTTTATCTCGCACGTACTTGCCTTCTTT 708679 Query 57705 GCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCA--CAAGAAGTGC 57762 |||||||||||||| || || ||||| || |||||||| | ||||| || || || | Sbjct 708678 GCCGCATCCGATGGCATCGTGAACGAAAACCTGGTCGAACG--TTTCAGCCAGGAGGTAC 708621 Query 57763 AAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAG 57822 | || ||||| || | || |||||||| |||||| | || || ||||| ||||| | Sbjct 708620 AGGTAACGGAAGCTCGCTGTTTTTACGGCTTTCAAATAGCGATGGAAAATGTGCACAGCG 708561 Query 57823 AAATGTATTCGCTACTCATCGATACGTAC 57851 | ||||| || || || ||||| |||||| Sbjct 708560 AGATGTACTCACTGCTAATCGACACGTAC 708532 Score = 82.4 bits (90), Expect = 7e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 58323 TACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAAC 58382 ||| |||| ||||||||||| || ||| | | |||||||||||||| ||||| ||| Sbjct 707917 TACCACACCAAAAATCCGTTCAGCTTCATGGAATTCATCTCGCTCGAGGGTAAGACGAAC 707858 Query 58383 TTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATG 58427 || ||||| || || || ||||||| ||||| | || |||||| Sbjct 707857 TTCTTCGAGAAGAAGGTGGGCGAATACCAAAAGTGGGGTGTGATG 707813 >seq949 Length=1771395 Score = 116 bits (128), Expect = 3e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || ||||| |||||||| || || || ||||||||| | || ||||| || Sbjct 446900 AAAAATGCAGATCTTCGTCAAGACTCTAACTGGAAAGACGATCACCCTGGAGGTTGAGCC 446841 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| | |||| | || || | || ||| ||||| || | || || || Sbjct 446840 ATCCGATACCATCGAGAATGTTAAGGCCAAGATTCAGGATAAGGAGGGAATCCCACCAGA 446781 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||||||| || || |||||||| ||||||||||| || || || || Sbjct 446780 TCAGCAGCGTCTGATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGTACGCTGTCGGACTA 446721 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || ||||| || ||||||||||| |||||||| ||| Sbjct 446720 CAATATTCAGAAGGAATCGACTCTCCATCTGGTCCTT 446684 >seq672 Length=1102954 Score = 109 bits (120), Expect = 5e-19 Identities = 166/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| |||||||| || || || || ||||| || ||||| | || || || || Sbjct 391807 AATCATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCC 391748 Query 31249 GTCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 || |||| |||||| || || || ||| | ||| |||||||| | || || | Sbjct 391747 TTCGGACACGATCGAAAATGTGAAGGCAAAGATTCA-GGATAAGGAAGGAATTCCCCCAG 391689 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 | ||||||||||| || ||||| || || ||| |||| || ||| || || | Sbjct 391688 ATCAGCAGCGTCTCATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGCACTCTGTCGGACT 391629 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | |||||||| || ||||| || ||||||||||| || |||| | || |||| Sbjct 391628 ACAACATTCAGAAGGAATCTACCCTTCATCTGGTGCTGCGACTTCGTGGTGGTA 391575 >seq575 Length=281738 Score = 96.9 bits (106), Expect = 3e-15 Identities = 167/240 (70%), Gaps = 6/240 (3%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || || || || || || || ||| | || || || || || Sbjct 23946 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACTATTACCCTTGAGGTCGAGCCCTCG 24005 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || || || ||| ||||| ||| | ||||| || ||| Sbjct 24006 GATACGATCGAGAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCGCCGGATCAG 24065 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 |||||| | || ||||| || || ||| |||| || | | | || || || ||||| Sbjct 24066 CAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAGGA-TGGACGCACACTGTCTGACTATAA 24124 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAGCG 31427 |||||| || || ||||| ||||||||||| ||| | ||| | || ||| ||||||| Sbjct 24125 CATTCAGAAGGAGTCGACCCTTCATCTGGTGCTTCGCCTGCGCGGTGGTGCCAAGAAGCG 24184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445758643664640