Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq497 116 7e-21 seq628 100 6e-16 >seq497 Length=402095 Score = 116 bits (128), Expect = 7e-21 Identities = 226/331 (68%), Gaps = 2/331 (1%) Strand=Plus/Plus Query 35396 GGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACC 35455 || || || || || || || || || || |||||||| |||||||| |||| | || Sbjct 123925 GGTGACTTAGGTCCAGTTTATGGCTTTCAGTGGCGTCACTTTGGTGCAAAATACAAAACA 123984 Query 35456 TGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTG 35515 || |||||| || ||| |||| || || || ||||| | | || | | | Sbjct 123985 TGCCACGACGATTACACAGGACAGGGAATCGACCAGTTGGCAGAAGTGATACACAAAATA 124044 Query 35516 AGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCAC 35575 | | | ||||| | ||| | | || || |||| || ||||||||| ||| ||| | Sbjct 124045 AAAAACAATCCTTACGATCGTCGAATCATCATGAGCGCTTGGAATCCTTCCGATATTCCC 124104 Query 35576 CTTATGGCTCTTCCTCCATGCCACATGACTG-CTCAATTTTATGTGGCTAATGGAGAATT 35634 ||||| | || || || ||| || || | || |||| ||| | |||||||| || Sbjct 124105 AACATGGCCTTACCGCCGTGTCAC-TGCTTGGCACAGTTTTTTGTTGGCAATGGAGAGTT 124163 Query 35635 GTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 ||| |||||| ||||||||||| | ||||| || ||||| || || || || ||||| Sbjct 124164 GTCTTGCCAGATGTATCAGCGATCGGCTGATGTAGGATTGGGTGTTCCGTTTAACATTGC 124223 Query 35695 ATCATACTCTCTTCTGACTCATCTGATGGCC 35725 |||||| | ||||| ||| |||| ||| Sbjct 124224 TAGCTACTCTTTGCTGACCCATATGATCGCC 124254 >seq628 Length=1452984 Score = 100 bits (110), Expect = 6e-16 Identities = 158/225 (70%), Gaps = 5/225 (2%) Strand=Plus/Minus Query 101855 AAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACGA----TTTGGCGGA 101910 |||||||||| | ||||| | || ||||| |||||| || | ||||||| | Sbjct 708397 AAGAAGAAGGCCGATTGGGCACTGAACTGGATCTCAAGCAAGAAGGCAAACTTTGGCG-A 708339 Query 101911 ACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCAT 101970 | | || || |||||||| || ||||| |||||||| || ||| || || |||| Sbjct 708338 GCGTGTCGTCGCGTTTGCTGCTGTCGAAGGTATCTTCTTCAGCGGTAGCTTTGCCGCCAT 708279 Query 101971 TTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTC 102030 ||||||| | ||||| | || | |||| || || |||| ||| || ||| | ||||| Sbjct 708278 TTTCTGGCTGAAGAAGCGTGGACTGATGCCGGGACTTACCTTCTCGAACGAGCTGATTTC 708219 Query 102031 TAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAA 102075 | || ||||| || || | |||||||| ||| || |||| || Sbjct 708218 GCGTGATGAAGGACTACACTGTGACTTTGCCTGCCTGATGTTTAA 708174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989566350769360