Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq872 410 2e-109
seq628 114 2e-20
>seq872
Length=887634
Score = 410 bits (454), Expect = 2e-109
Identities = 1226/1880 (65%), Gaps = 24/1880 (1%)
Strand=Plus/Plus
Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096
||||||| || ||||| |||| | || ||||| || || || |||||||| |||
Sbjct 220940 TTGTCCACCGTAAATTGGATGGCATTTACGGCCGGTTTGGTGCGCAGGTAGTACATGCCC 220999
Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156
|| ||||| || | |||| |||| ||||| || ||| || ||| ||| ||||
Sbjct 221000 GTCTTTAGTCCCATCTTCCACGCGTAGAAATGGATCGACGTCAGCTTGCCATAGTTCGGC 221059
Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216
|| || | || || || | ||||| |||||||| || ||||||| || || |||
Sbjct 221060 TCGGCCACGTGTATGTTAAATGATTGTGACTGATCGATAAACGCTCCCCGATCGGCCGCC 221119
Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 62275
||||| ||| || || | || ||||| | || || || | |||| | | |
Sbjct 221120 ATTTTGATGGATGTTTTCACCGAGATCTCCCATACCGTCTTGTACAGGTCGCGGATTTCC 221179
Query 62276 TTCTGGAAGGTTTGTAT--TCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATC 62333
|| | | | || || | ||||| ||||| | || || | ||||| ||
Sbjct 221180 TTTGGTATTGATTCAATGTTTTGAATCGATCCGTTGTTGGACAAGATGTTGTTCTTCATG 221239
Query 62334 TCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGG 62393
||| || ||| || || | |||| | || || ||||| |||| || || |||
Sbjct 221240 TCAAGATCCCACAAACCCATCGCTGTTAGATCTTGCAGCAGATGATGGTTCACCACCTGG 221299
Query 62394 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCA 62453
|| || || || | || | || |||||| || || ||||| || | ||||||
Sbjct 221300 AACTCGCCCGATAGCACACGTCGGTTGTAAACGTTCGACGTGTACGGCTCGAAGGACTCA 221359
Query 62454 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTT 62513
|| || ||||| ||||| || || || || |||||||| ||||||| || || ||
Sbjct 221360 TTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCATCGGTGCCAGCAGTAGCGAGTTA 221419
Query 62514 CTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGT 62573
| || ||||| || || || || || | | | ||| ||||| ||||||| ||||
Sbjct 221420 CGAATACCGTGCTTTGCAATCTTCTCCTTCAACTCTGTCCAGTTCCACAGATCCGTCGGT 221479
Query 62574 ACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGT 62632
| || ||||| | ||| || || | | || | ||| |||| ||
Sbjct 221480 TCTTTGTTCCACATTTCGTACTGTAGGACACCCTTGCTCACTGGACAA-CCTTCATACGT 221538
Query 62633 ATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAAT 62692
|| ||||| || ||| |||| | || || || || || | ||| || || || ||
Sbjct 221539 CTCGTATGGACCGTCCCGTGCAGCCAATTCGCAGCTTGCTTCCAGTGCTCCATAGTAGAT 221598
Query 62693 GGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAA 62752
||||||||| || | | ||| || | ||| || || ||| || ||||||| |
Sbjct 221599 GGTTTCAAATATTTGTTGATTCAGCTTTTGGGCCTCTTCGCTTTCGTATGGATAGCGCAT 221658
Query 62753 GAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 62812
| ||| ||||| || || | || || ||||| |||||||| || || || | | | ||
Sbjct 221659 TAAAATGAACGCATCGGCCATGCCCTGCACACCGATACCGATGGGCCTGTGGCGCATGTT 221718
Query 62813 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC- 62871
|| | || || || | ||||| || || || || || ||||| || ||||| |
Sbjct 221719 GGAACGCTTCGCCTCCGGCACCGGATAGTAGTTTATGTCGATGATTTTGTTCAGATTGCG 221778
Query 62872 TGACAATTACT---TTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC---TA 62925
|| ||||| ||| | ||||||||||| || | ||||| | || ||| |
Sbjct 221779 TG----TTACTATCTTGGCGACATCCTTCAGCTTTACGAAATCGTACGTCCTATCGGATT 221834
Query 62926 TTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATC-- 62983
|||| |||||||||| ||| | || |||||||| || || || | |||| | ||
Sbjct 221835 TTACGAACATGTTCAGTGCGATCGAGGCCAGATTGCAAACCGCAATTTCATC--CTTCGA 221892
Query 62984 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTG 63043
|| || | | ||||||||||| | ||| |||||| || || || | || || ||
Sbjct 221893 CGAGTACTCCACAATCTCAGTGCACAAGTTAGAACACTTAATGGTGCCAATGTTCTGCTG 221952
Query 63044 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 63103
|| || || ||| || |||||||| || || || | || || ||||| | |||
Sbjct 221953 GTTGCTTTTGCGGTTGCATGCATCCTTGTACAGCATATACGGTACGCCCGTTTCCACCTG 222012
Query 63104 AGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT-TATAGATTTGTATCTCCTTT 63162
||||| || ||||| ||| | | | ||||| | | || | | || |
Sbjct 222013 CGATTCAATGATCGCGAACCACAAATCCTGTGCCTTCACCTGGCGAATAAAACGACCCT- 222071
Query 63163 CTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAG 63222
|| | ||||| ||| |||| | ||||||| || ||||| || ||| | |
Sbjct 222072 CTTTCTCGTAGCCAGTGTACAGTGCCTCGAACTTTTCACCCCAGCTATCAGACAAACCGG 222131
Query 63223 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 63282
|||| || | || ||||| | |||| | ||| ||| ||| || | ||| || |
Sbjct 222132 GACAATCGTGAGGGCACATTAGACTCCACATTTCGTTCGCCTCCACCCGCTCCATGAACA 222191
Query 63283 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTAT 63342
|||| |||||||| | || ||| | || | || | ||||| || || || |
Sbjct 222192 GATCCGGAATCCACAAGGCGTAAAACATGTCGCGTGCACGCACCTCCTCTTTGCCGGTGT 222251
Query 63343 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 63402
| || || ||||| || ||| | | | |||| ||||||||||| | ||| ||||| |
Sbjct 222252 TTTTCTTCAGATCCAGAAACTCGAACACATCACCGTGCCACGGTTCGAGGTAGATGGCAA 222311
Query 63403 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 63462
| |||| || || ||||| || |||||||| | ||||| || || || || || || |
Sbjct 222312 AAGCTCCCGGGCGCTTGTTGCCACCCTGATCCACGTATCGGGCCGTATTGTTGTACACGC 222371
Query 63463 TCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGG 63522
|| |||||| | | |||||||| || ||||| || || ||||| || || | |
Sbjct 222372 GCAGCATTGGCACCAACCCGTTTGAAATTCCATTCGTGCCCGAGATGTACGTACCTTTCG 222431
Query 63523 CACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63581
| |||||| | | | | || || ||||| || || ||| || || | ||| ||
Sbjct 222432 CGCGAATAC-AGTGCACGTTCAGCCCAATTCCGCCAGCAGATTTTGAAATCAGTGCACAC 222490
Query 63582 CGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAG 63641
| || | ||| || ||||| ||||| ||||| || || |||| | || | ||||||
Sbjct 222491 TGCTTCAGCGTATCGTAGATACCTTCAATGCTGTCGTCCGACATGGTGAGCAAGAAACAG 222550
Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701
|||| || |||| || |||| ||| | ||| || || || || |||||
Sbjct 222551 GACGACAACTGCGGACGTTGCGTAGCCGCCGCAAACATGGTCGGTGAGGCATGGGTAAAG 222610
Query 63702 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63761
| || ||||| |||||||| ||||| || |||| || || || ||||||
Sbjct 222611 TAGCGCTCCGAAAGCAGATTGTAAGTCTCGATTGCTGCATCGATGTCTTCACCATGAATG 222670
Query 63762 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTC 63821
|| | || || ||||| ||||| ||||| |||| ||||| || ||| || || |||
Sbjct 222671 CCGATCGCAACGCGCATCAACATATGCTGCGGTCGCTCAACGATCTTGCCCTTGATCTTC 222730
Query 63822 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63881
||||||||||| || |||||||| || || ||||||||||| ||| || || ||
Sbjct 222731 AACAAGTAGGACCGCTCTAAAGTTTTGAAGCCGAAATAGTTGTACCCAAAATCGCGATCA 222790
Query 63882 TAAATAATAACCGAATTGAG 63901
||||| ||| ||||||| ||
Sbjct 222791 TAAATTATAGCCGAATTCAG 222810
>seq628
Length=1452984
Score = 114 bits (126), Expect = 2e-20
Identities = 181/257 (70%), Gaps = 3/257 (1%)
Strand=Plus/Plus
Query 33570 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTA 33629
|||||||||| || || || || ||||| || || || || | ||| | |||||
Sbjct 708174 TTAAACATCAGGCAGGCAAAGTCACAGTGTAGTCCTTCATCACGCGAAATCAGCTCGTTC 708233
Query 33630 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33689
|| || || ||||| ||||| || |||||||| || ||||| || |||| || ||
Sbjct 708234 GAGAAGGTAAGTCCCGGCATCAGTCCACGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTA 708293
Query 33690 CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33749
||| |||||||| ||||| || |||||||| || | | | ||| ||| | ||
Sbjct 708294 CCGCTGAAGAAGATACCTTCGACAGCAGCAAACGCGACGACACGCTCGCCAAAGTTTGCC 708353
Query 33750 CTGT--CATGT-ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 33806
| | | || ||||| || | ||||||||||||||||| || || || |||| ||||
Sbjct 708354 TTCTTGCTTGAGATCCAGTTCAGTGCCCAATCGGCCTTCTTCTTCACGCACGGCAGCGTT 708413
Query 33807 TCTATGGCATTAAAGAG 33823
|| || ||||| || ||
Sbjct 708414 TCAATTGCATTGAACAG 708430
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629806641173760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |