Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq872 410 2e-109 seq628 114 2e-20 >seq872 Length=887634 Score = 410 bits (454), Expect = 2e-109 Identities = 1226/1880 (65%), Gaps = 24/1880 (1%) Strand=Plus/Plus Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096 ||||||| || ||||| |||| | || ||||| || || || |||||||| ||| Sbjct 220940 TTGTCCACCGTAAATTGGATGGCATTTACGGCCGGTTTGGTGCGCAGGTAGTACATGCCC 220999 Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156 || ||||| || | |||| |||| ||||| || ||| || ||| ||| |||| Sbjct 221000 GTCTTTAGTCCCATCTTCCACGCGTAGAAATGGATCGACGTCAGCTTGCCATAGTTCGGC 221059 Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216 || || | || || || | ||||| |||||||| || ||||||| || || ||| Sbjct 221060 TCGGCCACGTGTATGTTAAATGATTGTGACTGATCGATAAACGCTCCCCGATCGGCCGCC 221119 Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 62275 ||||| ||| || || | || ||||| | || || || | |||| | | | Sbjct 221120 ATTTTGATGGATGTTTTCACCGAGATCTCCCATACCGTCTTGTACAGGTCGCGGATTTCC 221179 Query 62276 TTCTGGAAGGTTTGTAT--TCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATC 62333 || | | | || || | ||||| ||||| | || || | ||||| || Sbjct 221180 TTTGGTATTGATTCAATGTTTTGAATCGATCCGTTGTTGGACAAGATGTTGTTCTTCATG 221239 Query 62334 TCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGG 62393 ||| || ||| || || | |||| | || || ||||| |||| || || ||| Sbjct 221240 TCAAGATCCCACAAACCCATCGCTGTTAGATCTTGCAGCAGATGATGGTTCACCACCTGG 221299 Query 62394 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCA 62453 || || || || | || | || |||||| || || ||||| || | |||||| Sbjct 221300 AACTCGCCCGATAGCACACGTCGGTTGTAAACGTTCGACGTGTACGGCTCGAAGGACTCA 221359 Query 62454 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTT 62513 || || ||||| ||||| || || || || |||||||| ||||||| || || || Sbjct 221360 TTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCATCGGTGCCAGCAGTAGCGAGTTA 221419 Query 62514 CTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGT 62573 | || ||||| || || || || || | | | ||| ||||| ||||||| |||| Sbjct 221420 CGAATACCGTGCTTTGCAATCTTCTCCTTCAACTCTGTCCAGTTCCACAGATCCGTCGGT 221479 Query 62574 ACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGT 62632 | || ||||| | ||| || || | | || | ||| |||| || Sbjct 221480 TCTTTGTTCCACATTTCGTACTGTAGGACACCCTTGCTCACTGGACAA-CCTTCATACGT 221538 Query 62633 ATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAAT 62692 || ||||| || ||| |||| | || || || || || | ||| || || || || Sbjct 221539 CTCGTATGGACCGTCCCGTGCAGCCAATTCGCAGCTTGCTTCCAGTGCTCCATAGTAGAT 221598 Query 62693 GGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAA 62752 ||||||||| || | | ||| || | ||| || || ||| || ||||||| | Sbjct 221599 GGTTTCAAATATTTGTTGATTCAGCTTTTGGGCCTCTTCGCTTTCGTATGGATAGCGCAT 221658 Query 62753 GAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 62812 | ||| ||||| || || | || || ||||| |||||||| || || || | | | || Sbjct 221659 TAAAATGAACGCATCGGCCATGCCCTGCACACCGATACCGATGGGCCTGTGGCGCATGTT 221718 Query 62813 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC- 62871 || | || || || | ||||| || || || || || ||||| || ||||| | Sbjct 221719 GGAACGCTTCGCCTCCGGCACCGGATAGTAGTTTATGTCGATGATTTTGTTCAGATTGCG 221778 Query 62872 TGACAATTACT---TTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC---TA 62925 || ||||| ||| | ||||||||||| || | ||||| | || ||| | Sbjct 221779 TG----TTACTATCTTGGCGACATCCTTCAGCTTTACGAAATCGTACGTCCTATCGGATT 221834 Query 62926 TTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATC-- 62983 |||| |||||||||| ||| | || |||||||| || || || | |||| | || Sbjct 221835 TTACGAACATGTTCAGTGCGATCGAGGCCAGATTGCAAACCGCAATTTCATC--CTTCGA 221892 Query 62984 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTG 63043 || || | | ||||||||||| | ||| |||||| || || || | || || || Sbjct 221893 CGAGTACTCCACAATCTCAGTGCACAAGTTAGAACACTTAATGGTGCCAATGTTCTGCTG 221952 Query 63044 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 63103 || || || ||| || |||||||| || || || | || || ||||| | ||| Sbjct 221953 GTTGCTTTTGCGGTTGCATGCATCCTTGTACAGCATATACGGTACGCCCGTTTCCACCTG 222012 Query 63104 AGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT-TATAGATTTGTATCTCCTTT 63162 ||||| || ||||| ||| | | | ||||| | | || | | || | Sbjct 222013 CGATTCAATGATCGCGAACCACAAATCCTGTGCCTTCACCTGGCGAATAAAACGACCCT- 222071 Query 63163 CTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAG 63222 || | ||||| ||| |||| | ||||||| || ||||| || ||| | | Sbjct 222072 CTTTCTCGTAGCCAGTGTACAGTGCCTCGAACTTTTCACCCCAGCTATCAGACAAACCGG 222131 Query 63223 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 63282 |||| || | || ||||| | |||| | ||| ||| ||| || | ||| || | Sbjct 222132 GACAATCGTGAGGGCACATTAGACTCCACATTTCGTTCGCCTCCACCCGCTCCATGAACA 222191 Query 63283 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTAT 63342 |||| |||||||| | || ||| | || | || | ||||| || || || | Sbjct 222192 GATCCGGAATCCACAAGGCGTAAAACATGTCGCGTGCACGCACCTCCTCTTTGCCGGTGT 222251 Query 63343 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 63402 | || || ||||| || ||| | | | |||| ||||||||||| | ||| ||||| | Sbjct 222252 TTTTCTTCAGATCCAGAAACTCGAACACATCACCGTGCCACGGTTCGAGGTAGATGGCAA 222311 Query 63403 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 63462 | |||| || || ||||| || |||||||| | ||||| || || || || || || | Sbjct 222312 AAGCTCCCGGGCGCTTGTTGCCACCCTGATCCACGTATCGGGCCGTATTGTTGTACACGC 222371 Query 63463 TCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGG 63522 || |||||| | | |||||||| || ||||| || || ||||| || || | | Sbjct 222372 GCAGCATTGGCACCAACCCGTTTGAAATTCCATTCGTGCCCGAGATGTACGTACCTTTCG 222431 Query 63523 CACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63581 | |||||| | | | | || || ||||| || || ||| || || | ||| || Sbjct 222432 CGCGAATAC-AGTGCACGTTCAGCCCAATTCCGCCAGCAGATTTTGAAATCAGTGCACAC 222490 Query 63582 CGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAG 63641 | || | ||| || ||||| ||||| ||||| || || |||| | || | |||||| Sbjct 222491 TGCTTCAGCGTATCGTAGATACCTTCAATGCTGTCGTCCGACATGGTGAGCAAGAAACAG 222550 Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701 |||| || |||| || |||| ||| | ||| || || || || ||||| Sbjct 222551 GACGACAACTGCGGACGTTGCGTAGCCGCCGCAAACATGGTCGGTGAGGCATGGGTAAAG 222610 Query 63702 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63761 | || ||||| |||||||| ||||| || |||| || || || |||||| Sbjct 222611 TAGCGCTCCGAAAGCAGATTGTAAGTCTCGATTGCTGCATCGATGTCTTCACCATGAATG 222670 Query 63762 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTC 63821 || | || || ||||| ||||| ||||| |||| ||||| || ||| || || ||| Sbjct 222671 CCGATCGCAACGCGCATCAACATATGCTGCGGTCGCTCAACGATCTTGCCCTTGATCTTC 222730 Query 63822 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63881 ||||||||||| || |||||||| || || ||||||||||| ||| || || || Sbjct 222731 AACAAGTAGGACCGCTCTAAAGTTTTGAAGCCGAAATAGTTGTACCCAAAATCGCGATCA 222790 Query 63882 TAAATAATAACCGAATTGAG 63901 ||||| ||| ||||||| || Sbjct 222791 TAAATTATAGCCGAATTCAG 222810 >seq628 Length=1452984 Score = 114 bits (126), Expect = 2e-20 Identities = 181/257 (70%), Gaps = 3/257 (1%) Strand=Plus/Plus Query 33570 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTA 33629 |||||||||| || || || || ||||| || || || || | ||| | ||||| Sbjct 708174 TTAAACATCAGGCAGGCAAAGTCACAGTGTAGTCCTTCATCACGCGAAATCAGCTCGTTC 708233 Query 33630 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33689 || || || ||||| ||||| || |||||||| || ||||| || |||| || || Sbjct 708234 GAGAAGGTAAGTCCCGGCATCAGTCCACGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTA 708293 Query 33690 CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33749 ||| |||||||| ||||| || |||||||| || | | | ||| ||| | || Sbjct 708294 CCGCTGAAGAAGATACCTTCGACAGCAGCAAACGCGACGACACGCTCGCCAAAGTTTGCC 708353 Query 33750 CTGT--CATGT-ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 33806 | | | || ||||| || | ||||||||||||||||| || || || |||| |||| Sbjct 708354 TTCTTGCTTGAGATCCAGTTCAGTGCCCAATCGGCCTTCTTCTTCACGCACGGCAGCGTT 708413 Query 33807 TCTATGGCATTAAAGAG 33823 || || ||||| || || Sbjct 708414 TCAATTGCATTGAACAG 708430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629806641173760