Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq872 188 7e-43
>seq872
Length=887634
Score = 188 bits (208), Expect = 7e-43
Identities = 550/838 (66%), Gaps = 13/838 (2%)
Strand=Plus/Plus
Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849
|| || || |||| || | |||| |||| ||| || | || || ||||| || ||
Sbjct 220943 TCCACCGTAAATTGGATGGCATTTACGGCCGGTTTGGTGCGCAGGTAGTACATGCCCGTC 221002
Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909
||||| |||| |||| |||| ||||| || ||||| || | || | || |
Sbjct 221003 TTTAGTCCCATCTTCCACGCGTAGAAATGGATCGACGTCAGCTTGCCATAGTTCGGCTCG 221062
Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969
| | | ||| | | |||||| ||||| |||||||| || | ||||| ||||||
Sbjct 221063 GCCACGTGTATGTTAAATGATTGTGACTGATCGATAAACGCTCCCCGATCGGCCGCCATT 221122
Query 36970 TCTAAAATACAT-TTTTGA--GATATCTCCCAAACCGTTTTATATATTTGTTTTATATTA 37026
| | | || |||| | || |||||||| ||||| || || | | || |
Sbjct 221123 TTGA---TGGATGTTTTCACCGAGATCTCCCATACCGTCTTGTACAGGTCGCGGATTTCC 221179
Query 37027 TCTGGTA---AATCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATG 37083
| ||||| | || | | |||||| || || || | ||| || | ||||| |||
Sbjct 221180 TTTGGTATTGATTCAATGTTTTGAATCGATCCGTTGTTGGACAAGATGTTGTTCTTCATG 221239
Query 37084 TCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGA 37143
||| || ||||| | | | |||| ||| || || || | || || |||||
Sbjct 221240 TCAAGATCCCACAAACCCATCGCTGTTAGATCTTGCAGCAGATGATGGTTCACCACCTGG 221299
Query 37144 AAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCA 37203
|| || || |||| || | || | || | || || || || || | |||||||
Sbjct 221300 AACTCGCCCGATAGCACACGTCGGTTGTAAACGTTCGACGTGTACGGCTCGAAGGACTCA 221359
Query 37204 TTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTT 37263
|| || | |||||||| | || || || || ||||| ||||| | || || | | ||
Sbjct 221360 TTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCATCGGTGCCAGCAGTAG-CGAGTT 221418
Query 37264 CTCAAT-CCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG 37322
||| || || | ||| ||| || | || |||| | ||| | ||| || ||
Sbjct 221419 ACGAATACCGTGCTTTGCAATCTTCTCCTTCAACTCTGTCCAGTTCCACAGATCCGTCGG 221478
Query 37323 GTTCTTTAA-CCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATG 37381
|||||| |||||| || || ||||| | ||| || ||| ||||| || | | ||| |
Sbjct 221479 -TTCTTTGTTCCACATTTCGTACTGTAGGACACCCTTGCTCACTGGACAACCTTCATACG 221537
Query 37382 TCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATA 37441
|||| || || |||| | ||| | |||||| || | ||| ||||| |||| || |
Sbjct 221538 TCTCGTATGGACCGTCCCGTGCAGCCAATTCGCAGCTTGCTTCCAGTGCTCCATAGTAGA 221597
Query 37442 TTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCA 37501
| ||||| || |||||| ||| | ||| || |||||||| ||| ||| ||||| ||
Sbjct 221598 TGGTTTCAAATATTTGTTGATTCAGCTTTTGGGCCTCTTCGCTTTCGTATGGATAGCGCA 221657
Query 37502 ATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTAT 37561
||| || ||| |||| |||| ||||| ||||||||||| ||||| || || | | |
Sbjct 221658 TTAAAATGAACGCATCGGCCATGCCCTGCACACCGATACCGATGGGCCTGTGGCGCATGT 221717
Query 37562 TAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATT 37619
| || | || || ||| ||||| || || || || || ||||| || |||||
Sbjct 221718 TGGAACGCTTCGCCTCCGGCACCGGATAGTAGTTTATGTCGATGATTTTGTTCAGATT 221775
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468516647668480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |