Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq872 188 7e-43 >seq872 Length=887634 Score = 188 bits (208), Expect = 7e-43 Identities = 550/838 (66%), Gaps = 13/838 (2%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || || |||| || | |||| |||| ||| || | || || ||||| || || Sbjct 220943 TCCACCGTAAATTGGATGGCATTTACGGCCGGTTTGGTGCGCAGGTAGTACATGCCCGTC 221002 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 ||||| |||| |||| |||| ||||| || ||||| || | || | || | Sbjct 221003 TTTAGTCCCATCTTCCACGCGTAGAAATGGATCGACGTCAGCTTGCCATAGTTCGGCTCG 221062 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | | | ||| | | |||||| ||||| |||||||| || | ||||| |||||| Sbjct 221063 GCCACGTGTATGTTAAATGATTGTGACTGATCGATAAACGCTCCCCGATCGGCCGCCATT 221122 Query 36970 TCTAAAATACAT-TTTTGA--GATATCTCCCAAACCGTTTTATATATTTGTTTTATATTA 37026 | | | || |||| | || |||||||| ||||| || || | | || | Sbjct 221123 TTGA---TGGATGTTTTCACCGAGATCTCCCATACCGTCTTGTACAGGTCGCGGATTTCC 221179 Query 37027 TCTGGTA---AATCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATG 37083 | ||||| | || | | |||||| || || || | ||| || | ||||| ||| Sbjct 221180 TTTGGTATTGATTCAATGTTTTGAATCGATCCGTTGTTGGACAAGATGTTGTTCTTCATG 221239 Query 37084 TCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGA 37143 ||| || ||||| | | | |||| ||| || || || | || || ||||| Sbjct 221240 TCAAGATCCCACAAACCCATCGCTGTTAGATCTTGCAGCAGATGATGGTTCACCACCTGG 221299 Query 37144 AAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCA 37203 || || || |||| || | || | || | || || || || || | ||||||| Sbjct 221300 AACTCGCCCGATAGCACACGTCGGTTGTAAACGTTCGACGTGTACGGCTCGAAGGACTCA 221359 Query 37204 TTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTT 37263 || || | |||||||| | || || || || ||||| ||||| | || || | | || Sbjct 221360 TTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCATCGGTGCCAGCAGTAG-CGAGTT 221418 Query 37264 CTCAAT-CCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG 37322 ||| || || | ||| ||| || | || |||| | ||| | ||| || || Sbjct 221419 ACGAATACCGTGCTTTGCAATCTTCTCCTTCAACTCTGTCCAGTTCCACAGATCCGTCGG 221478 Query 37323 GTTCTTTAA-CCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATG 37381 |||||| |||||| || || ||||| | ||| || ||| ||||| || | | ||| | Sbjct 221479 -TTCTTTGTTCCACATTTCGTACTGTAGGACACCCTTGCTCACTGGACAACCTTCATACG 221537 Query 37382 TCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATA 37441 |||| || || |||| | ||| | |||||| || | ||| ||||| |||| || | Sbjct 221538 TCTCGTATGGACCGTCCCGTGCAGCCAATTCGCAGCTTGCTTCCAGTGCTCCATAGTAGA 221597 Query 37442 TTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCA 37501 | ||||| || |||||| ||| | ||| || |||||||| ||| ||| ||||| || Sbjct 221598 TGGTTTCAAATATTTGTTGATTCAGCTTTTGGGCCTCTTCGCTTTCGTATGGATAGCGCA 221657 Query 37502 ATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTAT 37561 ||| || ||| |||| |||| ||||| ||||||||||| ||||| || || | | | Sbjct 221658 TTAAAATGAACGCATCGGCCATGCCCTGCACACCGATACCGATGGGCCTGTGGCGCATGT 221717 Query 37562 TAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATT 37619 | || | || || ||| ||||| || || || || || ||||| || ||||| Sbjct 221718 TGGAACGCTTCGCCTCCGGCACCGGATAGTAGTTTATGTCGATGATTTTGTTCAGATT 221775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468516647668480