Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq872 394 1e-104 seq628 102 1e-16 >seq872 Length=887634 Score = 394 bits (436), Expect = 1e-104 Identities = 1226/1883 (65%), Gaps = 30/1883 (2%) Strand=Plus/Plus Query 64830 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 64889 ||||||| || ||||| |||| | || ||||| || || || |||||||| ||| Sbjct 220940 TTGTCCACCGTAAATTGGATGGCATTTACGGCCGGTTTGGTGCGCAGGTAGTACATGCCC 220999 Query 64890 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 64949 || ||||| || | |||| |||| ||||| || ||| || ||| ||| |||| Sbjct 221000 GTCTTTAGTCCCATCTTCCACGCGTAGAAATGGATCGACGTCAGCTTGCCATAGTTCGGC 221059 Query 64950 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 65009 || || | || || || | ||||| |||||||| || ||||||| || || ||| Sbjct 221060 TCGGCCACGTGTATGTTAAATGATTGTGACTGATCGATAAACGCTCCCCGATCGGCCGCC 221119 Query 65010 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 65068 ||||| ||| || || | || ||||| | || || || | |||| | | | Sbjct 221120 ATTTTGATGGATGTTTTCACCGAGATCTCCCATACCGTCTTGTACAGGTCGCGGATTTCC 221179 Query 65069 TTCTGGAAGGTTTGTAT--TCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATC 65126 || | | | || || | ||||| ||||| | | || || | ||||| || Sbjct 221180 TTTGGTATTGATTCAATGTTTTGAATCGATCCGTTGTTGGACAAGATGTTGTTCTTCATG 221239 Query 65127 TCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGA 65186 ||| || ||| || || | |||| | || || ||||| | || || || || Sbjct 221240 TCAAGATCCCACAAACCCATCGCTGTTAGATCTTGCAGCAGATGATGGTTCACCACCTGG 221299 Query 65187 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCA 65246 || || || || | || | || |||||| || || ||||| || | |||||| Sbjct 221300 AACTCGCCCGATAGCACACGTCGGTTGTAAACGTTCGACGTGTACGGCTCGAAGGACTCA 221359 Query 65247 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTT 65306 || || ||||| ||||| || || || || |||||||| ||||||| || || || Sbjct 221360 TTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCATCGGTGCCAGCAGTAGCGAGTTA 221419 Query 65307 CTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGT 65366 | || ||||| || || || || || | | ||| ||||| ||||||| |||| Sbjct 221420 CGAATACCGTGCTTTGCAATCTTCTCCTTCAACTCTGTCCAGTTCCACAGATCCGTCGGT 221479 Query 65367 ACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGT 65425 | ||||| | ||| || || | | || | ||| |||| || Sbjct 221480 TCTTTGTTCCACATTTCGTACTGTAGGACACCCTTGCTCACTGGACAA-CCTTCATACGT 221538 Query 65426 ATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAAT 65485 |||||||| || ||| |||| | ||| || || || || | ||| || || || || Sbjct 221539 CTCGTATGGACCGTCCCGTGCAGCCAATTCGCAGCTTGCTTCCAGTGCTCCATAGTAGAT 221598 Query 65486 GGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAA 65545 |||||| || || | | ||| || | ||| || || ||| || ||||||| | Sbjct 221599 GGTTTCAAATATTTGTTGATTCAGCTTTTGGGCCTCTTCGCTTTCGTATGGATAGCGCAT 221658 Query 65546 GAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 65605 | ||| ||||| || || | || || ||||| |||||||| || || || | | | || Sbjct 221659 TAAAATGAACGCATCGGCCATGCCCTGCACACCGATACCGATGGGCCTGTGGCGCATGTT 221718 Query 65606 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC- 65664 || | || || || | ||||| || || || || || ||||| || ||||| | Sbjct 221719 GGAACGCTTCGCCTCCGGCACCGGATAGTAGTTTATGTCGATGATTTTGTTCAGATTGCG 221778 Query 65665 TGACAATTACT---TTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATC---TA 65718 || ||||| ||| | ||||||||||| || | ||||| | | ||| | Sbjct 221779 TG----TTACTATCTTGGCGACATCCTTCAGCTTTACGAAATCGTACGTCCTATCGGATT 221834 Query 65719 TTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATC-- 65776 |||| |||||||||| ||| | || |||||||| ||||| || | |||| | || Sbjct 221835 TTACGAACATGTTCAGTGCGATCGAGGCCAGATTGCAAACCGCAATTTCATC--CTTCGA 221892 Query 65777 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTG 65836 || || | | ||||||||||| | ||| |||||| ||||| || | || || || Sbjct 221893 CGAGTACTCCACAATCTCAGTGCACAAGTTAGAACACTTAATGGTGCCAATGTTCTGCTG 221952 Query 65837 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 65896 || || || ||| || |||||||| || || || | || || ||||| | ||| Sbjct 221953 GTTGCTTTTGCGGTTGCATGCATCCTTGTACAGCATATACGGTACGCCCGTTTCCACCTG 222012 Query 65897 AGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT-TATAGATTTGTATCTCTTTT 65955 ||||| || ||||| ||| | | | ||||| | | || | | | | Sbjct 222013 CGATTCAATGATCGCGAACCACAAATCCTGTGCCTTCACCTGGCGAATAAAACGACCCT- 222071 Query 65956 CTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAG 66015 || | ||||| || |||| | ||||||| || ||||| || ||| || | Sbjct 222072 CTTTCTCGTAGCCAGTGTACAGTGCCTCGAACTTTTCACCCCAGCTATCAGACAAACCGG 222131 Query 66016 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 66075 |||| || | || ||||| | |||| | ||| ||| ||| || | ||| || | Sbjct 222132 GACAATCGTGAGGGCACATTAGACTCCACATTTCGTTCGCCTCCACCCGCTCCATGAACA 222191 Query 66076 GATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT---TCCTCGTTTCCTG 66132 |||| |||||||| | || |||| | || || || | | | ||||| || || | Sbjct 222192 GATCCGGAATCCACAAGGCG-TAAA-ACATGTCGCGTGC-ACGCACCTCCTCTTTGCCGG 222248 Query 66133 TATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGG 66192 | || || || ||||| || ||| | | | |||| ||||||||||| | ||| |||| Sbjct 222249 TGTTTTTCTTCAGATCCAGAAACTCGAACACATCACCGTGCCACGGTTCGAGGTAGATGG 222308 Query 66193 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 66252 | | | |||| || || ||||| || |||||||| | ||||| || || || || || | Sbjct 222309 CAAAAGCTCCCGGGCGCTTGTTGCCACCCTGATCCACGTATCGGGCCGTATTGTTGTACA 222368 Query 66253 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCAC 66312 | | || |||||| | | || || || | ||||| || || ||||| || | || Sbjct 222369 CGCGCAGCATTGGCACCAACCCGTTTGAAATTCCATTCGTGCCCGAGATGTACGTACCTT 222428 Query 66313 TTGCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 66371 | || |||||| | | | | || || ||||| || || ||| || || | ||| Sbjct 222429 TCGCGCGAATAC-AGTGCACGTTCAGCCCAATTCCGCCAGCAGATTTTGAAATCAGTGCA 222487 Query 66372 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 66431 || | || | |||||| ||||| || || || || || ||| |||| | || | ||| Sbjct 222488 CACTGCTTCAGCGTATCGTAGATACCTTCAATGCTGTCGTCCGACATGGTGAGCAAGAAA 222547 Query 66432 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 66491 ||| |||| || |||| || |||| ||| | ||| || || || || ||| Sbjct 222548 CAGGACGACAACTGCGGACGTTGCGTAGCCGCCGCAAACATGGTCGGTGAGGCATGGGTA 222607 Query 66492 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGA 66551 || | || ||||| |||||||| ||||| || |||| || || || |||| Sbjct 222608 AAGTAGCGCTCCGAAAGCAGATTGTAAGTCTCGATTGCTGCATCGATGTCTTCACCATGA 222667 Query 66552 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 66611 || || | || || ||||| ||||| ||||| |||| |||||||||||| || || Sbjct 222668 ATGCCGATCGCAACGCGCATCAACATATGCTGCGGTCGCTCAACGATCTTGCCCTTGATC 222727 Query 66612 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 66671 |||||||||||||| || |||||||| || || ||||||||||| ||| || || Sbjct 222728 TTCAACAAGTAGGACCGCTCTAAAGTTTTGAAGCCGAAATAGTTGTACCCAAAATCGCGA 222787 Query 66672 TCGTAAATAATAACCGAGTTGAG 66694 || ||||| ||| |||| || || Sbjct 222788 TCATAAATTATAGCCGAATTCAG 222810 >seq628 Length=1452984 Score = 102 bits (112), Expect = 1e-16 Identities = 178/257 (69%), Gaps = 3/257 (1%) Strand=Plus/Plus Query 36146 TTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTG 36205 |||||||||| || || || || |||||||| || || || | ||| | ||||| Sbjct 708174 TTAAACATCAGGCAGGCAAAGTCACAGTGTAGTCCTTCATCACGCGAAATCAGCTCGTTC 708233 Query 36206 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT 36265 || || || ||||| ||||| || |||||||| || ||||| || |||| ||||| Sbjct 708234 GAGAAGGTAAGTCCCGGCATCAGTCCACGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTA 708293 Query 36266 CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA 36325 || ||||| || ||||| || || ||||| || | | | ||| ||| | || Sbjct 708294 CCGCTGAAGAAGATACCTTCGACAGCAGCAAACGCGACGACACGCTCGCCAAAGTTTGCC 708353 Query 36326 CTGT--CATGT-ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC 36382 | | | || ||||| || | ||||||||||||||||| || || || |||| || Sbjct 708354 TTCTTGCTTGAGATCCAGTTCAGTGCCCAATCGGCCTTCTTCTTCACGCACGGCAGCGTT 708413 Query 36383 TCTATAGCATTAAAGAG 36399 || || ||||| || || Sbjct 708414 TCAATTGCATTGAACAG 708430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658161347793280