Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq628 104 2e-17 seq625 93.3 3e-14 >seq628 Length=1452984 Score = 104 bits (114), Expect = 2e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 22741 CGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATA 22800 ||| || | || ||||| ||||| ||||| || | || || ||||| ||||| Sbjct 708337 CGTGTCGTCGCGTTTGCTGCTGTCGAAGGTATCTTCTTCAGCGGTAGCTTTGCCGCCATT 708278 Query 22801 TTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGC 22860 |||||||||||||| ||| || ||||| || | | || || |||||| ||||| Sbjct 708277 TTCTGGCTGAAGAAGCGTGGACTGATGCCGGGACTTACCTTCTCGAACGAGCTGATTTCG 708218 Query 22861 CGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAA 22920 ||||| ||||| ||||||||||||||||| || || |||||| | | ||| | | ||| Sbjct 708217 CGTGATGAAGGACTACACTGTGACTTTGCCTGCCTGATGTTTAAGTATCTGGTACAGAAA 708158 Query 22921 CC 22922 || Sbjct 708157 CC 708156 >seq625 Length=188083 Score = 93.3 bits (102), Expect = 3e-14 Identities = 115/155 (74%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 33563 TACGCATACCAGAGATGGGCGACAAGTTTGCATCGTTC-ACGGCCCAGAAGGGCACGTGC 33621 ||||||| ||| |||| || || |||||||| ||| | |||| | |||| || |||||| Sbjct 99325 TACGCATTCCACAGATCGGTGATAAGTTTGCTTCGCGCCACGGAC-AGAAAGGTACGTGC 99267 Query 33622 GGCATGATGTACGACCAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTA 33681 || || |||| |||| || |||||||| ||| ||| ||| | |||||| | Sbjct 99266 GGTATTCAGTACCGCCAGGAAGATATGCCGTTTACGTGCGAGGGCATTACGCCGGACATT 99207 Query 33682 GTCATCAACCCGCATGCGTTCCCCTCGCGCATGAC 33716 ||||||||||||| || |||| ||||| ||||| Sbjct 99206 ATCATCAACCCGCACGCTATCCCGTCGCGTATGAC 99172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356227556496976