Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq672 95.1 1e-14 seq575 95.1 1e-14 seq628 91.5 1e-13 >seq672 Length=1102954 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| ||||| || || |||||||| || || || |||| || || ||||| Sbjct 391601 TGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGGCCATCCTCCAGCTGC 391660 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||| || |||| ||||| |||||||| || || || ||||| || || ||| | || Sbjct 391661 TTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATTCCTTCCTTATCC-TGAATCTT 391719 Query 139682 TGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || || | | ||| | ||||| | ||||| ||||||| || | ||||||||||| Sbjct 391720 TGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGGT 391779 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||||| ||||| || ||||| Sbjct 391780 GAGTGTTTTCACGAAAATCTGCAT 391803 >seq575 Length=281738 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| || ||||| || ||||||||||| || || ||||| || | || || ||||| Sbjct 24148 TGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGACAGTGTGCGTCCA-TCCTCCAGCTG 24090 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 ||||| || |||||| ||| |||||||| || || ||||| || || || ||| || Sbjct 24089 CTTACCGGCGAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCCTTATCCTGGATCTT 24030 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | | || | || || | |||||| ||||||| ||| | ||||| || || Sbjct 24029 CGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATAGTCTTACCCGT 23970 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||||| ||||| || ||||| Sbjct 23969 GAGGGTTTTGACGAAGATCTGCAT 23946 >seq628 Length=1452984 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 52552 CCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCCACT 52611 ||||| ||| || |||| ||||||||| |||| |||||| || | | || || | Sbjct 708406 CCGTGCGTGAAGAAGAAGGCCGATTGGGCACTGAACTGGATCTCAAGCAAGAAGGCAAAC 708347 Query 52612 TTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTT 52671 |||| ||| ||| | |||||||||||| || |||||| | || || ||||| ||| Sbjct 708346 TTTGGCGAGCGTGTCGTCGCGTTTGCTGCTGTCGAAGGTATCTTCTTCAGCGGTAGCTTT 708287 Query 52672 GCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGA 52730 || || || || | | || || | ||| | | ||||| || || || || ||||| Sbjct 708286 GCCGCCATTTTCTGGCTGAAGAAGCGTGGAC-TGATGCCGGGACTTACCTTCTCGAACGA 708228 Query 52731 GTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTG 52772 | |||| ||||| || |||||| | ||| || ||||| || Sbjct 708227 GCTGATTTCGCGTGATGAAGGACTACACTGTGACTTTGCCTG 708186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496055368486400