Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq672 95.1 1e-14
seq575 95.1 1e-14
seq628 91.5 1e-13
>seq672
Length=1102954
Score = 95.1 bits (104), Expect = 1e-14
Identities = 145/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621
|||| ||||| || || |||||||| || || || |||| || || |||||
Sbjct 391601 TGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGGCCATCCTCCAGCTGC 391660
Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681
||||| || |||| ||||| |||||||| || || || ||||| || || ||| | ||
Sbjct 391661 TTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATTCCTTCCTTATCC-TGAATCTT 391719
Query 139682 TGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740
|| || | | ||| | ||||| | ||||| ||||||| || | |||||||||||
Sbjct 391720 TGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGGT 391779
Query 139741 CAACGTTTTTACGAATATTTGCAT 139764
| ||||| ||||| || |||||
Sbjct 391780 GAGTGTTTTCACGAAAATCTGCAT 391803
>seq575
Length=281738
Score = 95.1 bits (104), Expect = 1e-14
Identities = 145/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620
|||| || ||||| || ||||||||||| || || ||||| || | || || |||||
Sbjct 24148 TGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGACAGTGTGCGTCCA-TCCTCCAGCTG 24090
Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680
||||| || |||||| ||| |||||||| || || ||||| || || || ||| ||
Sbjct 24089 CTTACCGGCGAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCCTTATCCTGGATCTT 24030
Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740
|| | | || | || || | |||||| ||||||| ||| | ||||| || ||
Sbjct 24029 CGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATAGTCTTACCCGT 23970
Query 139741 CAACGTTTTTACGAATATTTGCAT 139764
| ||||| ||||| || |||||
Sbjct 23969 GAGGGTTTTGACGAAGATCTGCAT 23946
>seq628
Length=1452984
Score = 91.5 bits (100), Expect = 1e-13
Identities = 155/222 (70%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 52552 CCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCCACT 52611
||||| ||| || |||| ||||||||| |||| |||||| || | | || || |
Sbjct 708406 CCGTGCGTGAAGAAGAAGGCCGATTGGGCACTGAACTGGATCTCAAGCAAGAAGGCAAAC 708347
Query 52612 TTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTT 52671
|||| ||| ||| | |||||||||||| || |||||| | || || ||||| |||
Sbjct 708346 TTTGGCGAGCGTGTCGTCGCGTTTGCTGCTGTCGAAGGTATCTTCTTCAGCGGTAGCTTT 708287
Query 52672 GCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGA 52730
|| || || || | | || || | ||| | | ||||| || || || || |||||
Sbjct 708286 GCCGCCATTTTCTGGCTGAAGAAGCGTGGAC-TGATGCCGGGACTTACCTTCTCGAACGA 708228
Query 52731 GTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTG 52772
| |||| ||||| || |||||| | ||| || ||||| ||
Sbjct 708227 GCTGATTTCGCGTGATGAAGGACTACACTGTGACTTTGCCTG 708186
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496055368486400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |