Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq872 408 6e-109
seq628 123 4e-23
>seq872
Length=887634
Score = 408 bits (452), Expect = 6e-109
Identities = 1231/1881 (65%), Gaps = 26/1881 (1%)
Strand=Plus/Plus
Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768
||||||| || ||||| |||| | || ||||| || || || |||||||| |||
Sbjct 220940 TTGTCCACCGTAAATTGGATGGCATTTACGGCCGGTTTGGTGCGCAGGTAGTACATGCCC 220999
Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828
|| ||||| || | |||| |||||||||| || ||| || ||| ||| ||||
Sbjct 221000 GTCTTTAGTCCCATCTTCCACGCGTAGAAATGGATCGACGTCAGCTTGCCATAGTTCGGC 221059
Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888
|| || | || || || | ||||| |||||||| || ||||||| || || |||
Sbjct 221060 TCGGCCACGTGTATGTTAAATGATTGTGACTGATCGATAAACGCTCCCCGATCGGCCGCC 221119
Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 78947
||||| ||| || || | || ||||| | || || || | |||| | | |
Sbjct 221120 ATTTTGATGGATGTTTTCACCGAGATCTCCCATACCGTCTTGTACAGGTCGCGGATTTCC 221179
Query 78948 TTCTGGAAGGTTTGTAT--TCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATC 79005
|| | | | || || | ||||| ||||| | | || || | ||||| ||
Sbjct 221180 TTTGGTATTGATTCAATGTTTTGAATCGATCCGTTGTTGGACAAGATGTTGTTCTTCATG 221239
Query 79006 TCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGA 79065
|| || ||| || || | |||| | || || ||||| | || || || ||
Sbjct 221240 TCAAGATCCCACAAACCCATCGCTGTTAGATCTTGCAGCAGATGATGGTTCACCACCTGG 221299
Query 79066 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCA 79125
|| || || || | || | || |||||| || || || || || | || |||
Sbjct 221300 AACTCGCCCGATAGCACACGTCGGTTGTAAACGTTCGACGTGTACGGCTCGAAGGACTCA 221359
Query 79126 TTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTT 79185
|| || ||||| ||||| || || || || || ||||| ||||||| || || ||
Sbjct 221360 TTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCATCGGTGCCAGCAGTAGCGAGTTA 221419
Query 79186 CTAAGACCGTATGATCTG--ATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACG 79243
| || ||||| | | || || || || || | | ||| | ||| ||||| | ||
Sbjct 221420 CGAATACCGT--GCTTTGCAATCTTCTCCTTCAACTCTGTCCAGTTCCACAGATCCGTCG 221477
Query 79244 GGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATG 79303
| | ||||| | || || ||||| | ||| || || | | ||| || |
Sbjct 221478 GTTCTTTGTTCCACATTTCGTACTGTAGGACACCCTTGCTCACTGGACAACCTTCATACG 221537
Query 79304 TTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAA 79363
| || || || || ||| | | || ||||| || || || || | |||||| || || |
Sbjct 221538 TCTCGTATGGACCGTCCCGTGCAGCCAATTCGCAGCTTGCTTCCAGTGCTCCATAGTAGA 221597
Query 79364 TGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTA 79423
||||||| || || | | ||| || | ||| || ||| ||| || ||||||| |
Sbjct 221598 TGGTTTCAAATATTTGTTGATTCAGCTTTTGGGCCTCTTCGCTTTCGTATGGATAGCGCA 221657
Query 79424 AGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 79483
| ||| ||||| || || | || || ||||| |||||||| || || || | | | |
Sbjct 221658 TTAAAATGAACGCATCGGCCATGCCCTGCACACCGATACCGATGGGCCTGTGGCGCATGT 221717
Query 79484 TAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCC 79543
| ||| | || || || | ||||| || || || || || ||||| || ||||| |
Sbjct 221718 TGGAACGCTTCGCCTCCGGCACCGGATAGTAGTTTATGTCGATGATTTTGTTCAGATTGC 221777
Query 79544 TGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCC-ATC---TATT 79599
|| || ||| | |||||||| || || | ||||| | ||||| ||| | ||
Sbjct 221778 GTGTTACTATCTTGGCGACATCCTTCAGCTTTACGAAATCGTA-CGTCCTATCGGATTTT 221836
Query 79600 ACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATC--CG 79657
|| |||||||||| |||| || |||||||| ||||| || | |||| | || ||
Sbjct 221837 ACGAACATGTTCAGTGCGATCGAGGCCAGATTGCAAACCGCAATTTCATC--CTTCGACG 221894
Query 79658 CATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGAT 79717
|| | | || |||||||| | |||| |||||||||||| || | || || || |
Sbjct 221895 AGTACTCCACAATCTCAGTGCACAAGTTAGAACACTTAATGGTGCCAATGTTCTGCTGGT 221954
Query 79718 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAG 79777
| || || ||| || |||||||| || || || |||| || ||||| | ||| |
Sbjct 221955 TGCTTTTGCGGTTGCATGCATCCTTGTACAGCATATACGGTACGCCCGTTTCCACCTGCG 222014
Query 79778 ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT-TATAGACTTGTATCTCTTTTCT 79836
|||| || ||||| ||| | | | ||||| | | || | | | | ||
Sbjct 222015 ATTCAATGATCGCGAACCACAAATCCTGTGCCTTCACCTGGCGAATAAAACGACCCT-CT 222073
Query 79837 CTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGA 79896
| ||||| || || | | ||||||| || ||||| ||| || || |||
Sbjct 222074 TTCTCGTAGCCAGTGTACAGTGCCTCGAACTTTTCACCCCAGCTATCAGACAAACCGGGA 222133
Query 79897 CATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGA 79956
|| |||| ||| ||||| | |||| | | | ||| || || | ||| || |||
Sbjct 222134 CAATCGTGAGGGCACATTAGACTCCACATTTCGTTCGCCTCCACCCGCTCCATGAACAGA 222193
Query 79957 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC---TCCTCGTTTCCTGTA 80013
|| |||||||| | || |||| | || || || | | || ||||| || || ||
Sbjct 222194 TCCGGAATCCACAAGGCG-TAAA-ACATGTCGCGTGC-ACGCACCTCCTCTTTGCCGGTG 222250
Query 80014 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 80073
|| || || ||||| || ||| | | | |||| ||||||||||| | ||| |||||
Sbjct 222251 TTTTTCTTCAGATCCAGAAACTCGAACACATCACCGTGCCACGGTTCGAGGTAGATGGCA 222310
Query 80074 ATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 80133
| | ||||||| || ||||| || |||||||| | ||||| || || || || || ||
Sbjct 222311 AAAGCTCCCGGGCGCTTGTTGCCACCCTGATCCACGTATCGGGCCGTATTGTTGTACACG 222370
Query 80134 CTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTG 80193
| || |||||| | | || || || | ||||| || || ||||| || | || |
Sbjct 222371 CGCAGCATTGGCACCAACCCGTTTGAAATTCCATTCGTGCCCGAGATGTACGTACCTTTC 222430
Query 80194 GCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 80252
|| |||||| | | | | || || ||||| || || ||| || || | ||| ||
Sbjct 222431 GCGCGAATAC-AGTGCACGTTCAGCCCAATTCCGCCAGCAGATTTTGAAATCAGTGCACA 222489
Query 80253 TCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACA 80312
| || | |||||| ||||| || || ||||| || || |||| | || | |||||
Sbjct 222490 CTGCTTCAGCGTATCGTAGATACCTTCAATGCTGTCGTCCGACATGGTGAGCAAGAAACA 222549
Query 80313 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 80372
| |||| || |||| || |||| ||| | ||| || || || || |||||
Sbjct 222550 GGACGACAACTGCGGACGTTGCGTAGCCGCCGCAAACATGGTCGGTGAGGCATGGGTAAA 222609
Query 80373 CCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAAT 80432
| || || || |||||||| ||||| || |||| || || || ||||||
Sbjct 222610 GTAGCGCTCCGAAAGCAGATTGTAAGTCTCGATTGCTGCATCGATGTCTTCACCATGAAT 222669
Query 80433 TCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTT 80492
|| | ||| || ||||| ||||| ||||| |||| |||||||||||| || || ||
Sbjct 222670 GCCGATCGCAACGCGCATCAACATATGCTGCGGTCGCTCAACGATCTTGCCCTTGATCTT 222729
Query 80493 CAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 80552
||||||||| || || |||||||| || || ||||||||||| ||| || || ||
Sbjct 222730 CAACAAGTAGGACCGCTCTAAAGTTTTGAAGCCGAAATAGTTGTACCCAAAATCGCGATC 222789
Query 80553 GTAAATAATAACCGAGTTGAG 80573
||||| ||| |||| || ||
Sbjct 222790 ATAAATTATAGCCGAATTCAG 222810
>seq628
Length=1452984
Score = 123 bits (136), Expect = 4e-23
Identities = 183/257 (71%), Gaps = 3/257 (1%)
Strand=Plus/Plus
Query 49948 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTG 50007
|||||||||| || || || || ||||| || || || || | ||| || |||||
Sbjct 708174 TTAAACATCAGGCAGGCAAAGTCACAGTGTAGTCCTTCATCACGCGAAATCAGCTCGTTC 708233
Query 50008 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC 50067
|| || || ||||| ||||| || |||||||| || ||||| || |||| |||||
Sbjct 708234 GAGAAGGTAAGTCCCGGCATCAGTCCACGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTA 708293
Query 50068 CCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG 50127
|| |||||||| ||||| || || ||||| || || | | ||| ||| | | ||
Sbjct 708294 CCGCTGAAGAAGATACCTTCGACAGCAGCAAACGCGACGACACGCTCGCCAAAGTTTGCC 708353
Query 50128 CTGT--CATGT-ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 50184
| | | || ||||| || | ||||||||||||||||| || || || |||| ||||
Sbjct 708354 TTCTTGCTTGAGATCCAGTTCAGTGCCCAATCGGCCTTCTTCTTCACGCACGGCAGCGTT 708413
Query 50185 TCTATGGCATTAAAGAG 50201
|| || ||||| || ||
Sbjct 708414 TCAATTGCATTGAACAG 708430
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718256302122880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |