Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq872 408 6e-109 seq628 123 4e-23 >seq872 Length=887634 Score = 408 bits (452), Expect = 6e-109 Identities = 1231/1881 (65%), Gaps = 26/1881 (1%) Strand=Plus/Plus Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768 ||||||| || ||||| |||| | || ||||| || || || |||||||| ||| Sbjct 220940 TTGTCCACCGTAAATTGGATGGCATTTACGGCCGGTTTGGTGCGCAGGTAGTACATGCCC 220999 Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828 || ||||| || | |||| |||||||||| || ||| || ||| ||| |||| Sbjct 221000 GTCTTTAGTCCCATCTTCCACGCGTAGAAATGGATCGACGTCAGCTTGCCATAGTTCGGC 221059 Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888 || || | || || || | ||||| |||||||| || ||||||| || || ||| Sbjct 221060 TCGGCCACGTGTATGTTAAATGATTGTGACTGATCGATAAACGCTCCCCGATCGGCCGCC 221119 Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 78947 ||||| ||| || || | || ||||| | || || || | |||| | | | Sbjct 221120 ATTTTGATGGATGTTTTCACCGAGATCTCCCATACCGTCTTGTACAGGTCGCGGATTTCC 221179 Query 78948 TTCTGGAAGGTTTGTAT--TCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATC 79005 || | | | || || | ||||| ||||| | | || || | ||||| || Sbjct 221180 TTTGGTATTGATTCAATGTTTTGAATCGATCCGTTGTTGGACAAGATGTTGTTCTTCATG 221239 Query 79006 TCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGA 79065 || || ||| || || | |||| | || || ||||| | || || || || Sbjct 221240 TCAAGATCCCACAAACCCATCGCTGTTAGATCTTGCAGCAGATGATGGTTCACCACCTGG 221299 Query 79066 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCA 79125 || || || || | || | || |||||| || || || || || | || ||| Sbjct 221300 AACTCGCCCGATAGCACACGTCGGTTGTAAACGTTCGACGTGTACGGCTCGAAGGACTCA 221359 Query 79126 TTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTT 79185 || || ||||| ||||| || || || || || ||||| ||||||| || || || Sbjct 221360 TTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCATCGGTGCCAGCAGTAGCGAGTTA 221419 Query 79186 CTAAGACCGTATGATCTG--ATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACG 79243 | || ||||| | | || || || || || | | ||| | ||| ||||| | || Sbjct 221420 CGAATACCGT--GCTTTGCAATCTTCTCCTTCAACTCTGTCCAGTTCCACAGATCCGTCG 221477 Query 79244 GGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATG 79303 | | ||||| | || || ||||| | ||| || || | | ||| || | Sbjct 221478 GTTCTTTGTTCCACATTTCGTACTGTAGGACACCCTTGCTCACTGGACAACCTTCATACG 221537 Query 79304 TTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAA 79363 | || || || || ||| | | || ||||| || || || || | |||||| || || | Sbjct 221538 TCTCGTATGGACCGTCCCGTGCAGCCAATTCGCAGCTTGCTTCCAGTGCTCCATAGTAGA 221597 Query 79364 TGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTA 79423 ||||||| || || | | ||| || | ||| || ||| ||| || ||||||| | Sbjct 221598 TGGTTTCAAATATTTGTTGATTCAGCTTTTGGGCCTCTTCGCTTTCGTATGGATAGCGCA 221657 Query 79424 AGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 79483 | ||| ||||| || || | || || ||||| |||||||| || || || | | | | Sbjct 221658 TTAAAATGAACGCATCGGCCATGCCCTGCACACCGATACCGATGGGCCTGTGGCGCATGT 221717 Query 79484 TAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCC 79543 | ||| | || || || | ||||| || || || || || ||||| || ||||| | Sbjct 221718 TGGAACGCTTCGCCTCCGGCACCGGATAGTAGTTTATGTCGATGATTTTGTTCAGATTGC 221777 Query 79544 TGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCC-ATC---TATT 79599 || || ||| | |||||||| || || | ||||| | ||||| ||| | || Sbjct 221778 GTGTTACTATCTTGGCGACATCCTTCAGCTTTACGAAATCGTA-CGTCCTATCGGATTTT 221836 Query 79600 ACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATC--CG 79657 || |||||||||| |||| || |||||||| ||||| || | |||| | || || Sbjct 221837 ACGAACATGTTCAGTGCGATCGAGGCCAGATTGCAAACCGCAATTTCATC--CTTCGACG 221894 Query 79658 CATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGAT 79717 || | | || |||||||| | |||| |||||||||||| || | || || || | Sbjct 221895 AGTACTCCACAATCTCAGTGCACAAGTTAGAACACTTAATGGTGCCAATGTTCTGCTGGT 221954 Query 79718 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAG 79777 | || || ||| || |||||||| || || || |||| || ||||| | ||| | Sbjct 221955 TGCTTTTGCGGTTGCATGCATCCTTGTACAGCATATACGGTACGCCCGTTTCCACCTGCG 222014 Query 79778 ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT-TATAGACTTGTATCTCTTTTCT 79836 |||| || ||||| ||| | | | ||||| | | || | | | | || Sbjct 222015 ATTCAATGATCGCGAACCACAAATCCTGTGCCTTCACCTGGCGAATAAAACGACCCT-CT 222073 Query 79837 CTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGA 79896 | ||||| || || | | ||||||| || ||||| ||| || || ||| Sbjct 222074 TTCTCGTAGCCAGTGTACAGTGCCTCGAACTTTTCACCCCAGCTATCAGACAAACCGGGA 222133 Query 79897 CATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGA 79956 || |||| ||| ||||| | |||| | | | ||| || || | ||| || ||| Sbjct 222134 CAATCGTGAGGGCACATTAGACTCCACATTTCGTTCGCCTCCACCCGCTCCATGAACAGA 222193 Query 79957 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC---TCCTCGTTTCCTGTA 80013 || |||||||| | || |||| | || || || | | || ||||| || || || Sbjct 222194 TCCGGAATCCACAAGGCG-TAAA-ACATGTCGCGTGC-ACGCACCTCCTCTTTGCCGGTG 222250 Query 80014 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 80073 || || || ||||| || ||| | | | |||| ||||||||||| | ||| ||||| Sbjct 222251 TTTTTCTTCAGATCCAGAAACTCGAACACATCACCGTGCCACGGTTCGAGGTAGATGGCA 222310 Query 80074 ATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 80133 | | ||||||| || ||||| || |||||||| | ||||| || || || || || || Sbjct 222311 AAAGCTCCCGGGCGCTTGTTGCCACCCTGATCCACGTATCGGGCCGTATTGTTGTACACG 222370 Query 80134 CTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTG 80193 | || |||||| | | || || || | ||||| || || ||||| || | || | Sbjct 222371 CGCAGCATTGGCACCAACCCGTTTGAAATTCCATTCGTGCCCGAGATGTACGTACCTTTC 222430 Query 80194 GCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 80252 || |||||| | | | | || || ||||| || || ||| || || | ||| || Sbjct 222431 GCGCGAATAC-AGTGCACGTTCAGCCCAATTCCGCCAGCAGATTTTGAAATCAGTGCACA 222489 Query 80253 TCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACA 80312 | || | |||||| ||||| || || ||||| || || |||| | || | ||||| Sbjct 222490 CTGCTTCAGCGTATCGTAGATACCTTCAATGCTGTCGTCCGACATGGTGAGCAAGAAACA 222549 Query 80313 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 80372 | |||| || |||| || |||| ||| | ||| || || || || ||||| Sbjct 222550 GGACGACAACTGCGGACGTTGCGTAGCCGCCGCAAACATGGTCGGTGAGGCATGGGTAAA 222609 Query 80373 CCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAAT 80432 | || || || |||||||| ||||| || |||| || || || |||||| Sbjct 222610 GTAGCGCTCCGAAAGCAGATTGTAAGTCTCGATTGCTGCATCGATGTCTTCACCATGAAT 222669 Query 80433 TCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTT 80492 || | ||| || ||||| ||||| ||||| |||| |||||||||||| || || || Sbjct 222670 GCCGATCGCAACGCGCATCAACATATGCTGCGGTCGCTCAACGATCTTGCCCTTGATCTT 222729 Query 80493 CAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 80552 ||||||||| || || |||||||| || || ||||||||||| ||| || || || Sbjct 222730 CAACAAGTAGGACCGCTCTAAAGTTTTGAAGCCGAAATAGTTGTACCCAAAATCGCGATC 222789 Query 80553 GTAAATAATAACCGAGTTGAG 80573 ||||| ||| |||| || || Sbjct 222790 ATAAATTATAGCCGAATTCAG 222810 >seq628 Length=1452984 Score = 123 bits (136), Expect = 4e-23 Identities = 183/257 (71%), Gaps = 3/257 (1%) Strand=Plus/Plus Query 49948 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTG 50007 |||||||||| || || || || ||||| || || || || | ||| || ||||| Sbjct 708174 TTAAACATCAGGCAGGCAAAGTCACAGTGTAGTCCTTCATCACGCGAAATCAGCTCGTTC 708233 Query 50008 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC 50067 || || || ||||| ||||| || |||||||| || ||||| || |||| ||||| Sbjct 708234 GAGAAGGTAAGTCCCGGCATCAGTCCACGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTA 708293 Query 50068 CCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG 50127 || |||||||| ||||| || || ||||| || || | | ||| ||| | | || Sbjct 708294 CCGCTGAAGAAGATACCTTCGACAGCAGCAAACGCGACGACACGCTCGCCAAAGTTTGCC 708353 Query 50128 CTGT--CATGT-ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 50184 | | | || ||||| || | ||||||||||||||||| || || || |||| |||| Sbjct 708354 TTCTTGCTTGAGATCCAGTTCAGTGCCCAATCGGCCTTCTTCTTCACGCACGGCAGCGTT 708413 Query 50185 TCTATGGCATTAAAGAG 50201 || || ||||| || || Sbjct 708414 TCAATTGCATTGAACAG 708430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718256302122880