Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq872 360 3e-94 seq628 111 2e-19 >seq872 Length=887634 Score = 360 bits (398), Expect = 3e-94 Identities = 1209/1878 (64%), Gaps = 20/1878 (1%) Strand=Plus/Plus Query 70792 TTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCT 70851 ||||||| ||||| || |||| | || | ||| || || || ||||||||||| Sbjct 220940 TTGTCCACCGTAAATTGGATGGCATTTACGGCCGGTTTGGTGCGCAGGTAGTACATGCCC 220999 Query 70852 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGA 70911 || ||||| || | |||| |||| ||||| || ||| || ||| |||| | || Sbjct 221000 GTCTTTAGTCCCATCTTCCACGCGTAGAAATGGATCGACGTCAGCTTGCCATAGTTCGGC 221059 Query 70912 TCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 70971 ||||| | ||| || || | || || |||||||| || ||||||| || || ||| Sbjct 221060 TCGGCCACGTGTATGTTAAATGATTGTGACTGATCGATAAACGCTCCCCGATCGGCCGCC 221119 Query 70972 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 71030 ||||| ||| || || | || ||||| | || || || | |||| | | | Sbjct 221120 ATTTTGATGGATGTTTTCACCGAGATCTCCCATACCGTCTTGTACAGGTCGCGGATTTCC 221179 Query 71031 TTCTGGAAGGTTTGTAT--TCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATC 71088 || | | | || || | ||||| ||||| | | | || | || || || Sbjct 221180 TTTGGTATTGATTCAATGTTTTGAATCGATCCGTTGTTGGACAAGATGTTGTTCTTCATG 221239 Query 71089 TCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGA 71148 || || ||| || || | |||| | || || |||||| | || || || || Sbjct 221240 TCAAGATCCCACAAACCCATCGCTGTTAGATCTTGCAGCAGATGATGGTTCACCACCTGG 221299 Query 71149 AATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCA 71208 || || || || | || | || |||||| || || ||||| || | |||||| Sbjct 221300 AACTCGCCCGATAGCACACGTCGGTTGTAAACGTTCGACGTGTACGGCTCGAAGGACTCA 221359 Query 71209 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTT 71268 || || ||||| ||||| || || || || |||||||| ||||||| || ||| || Sbjct 221360 TTGTTGCCCAATATTTGTGCCGTCGAAGCTGTCGGCATCGGTGCCAGCAGTAGCGAGTTA 221419 Query 71269 CTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGT 71328 | || ||| || | || || || || | | ||| ||||| ||||||| ||| Sbjct 221420 CGAATACCGTGCTTTGCAATCTTCTCCTTCAACTCTGTCCAGTTCCACAGATCCGTCGGT 221479 Query 71329 ACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTA 71388 | | || || || | | ||| |||| || Sbjct 221480 TCTTTGTTCCACATTTCGTACTGTAGGACACCCTTGCTCACTGGACAACCTTCATACGTC 221539 Query 71389 TCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATG 71448 |||||||| || || | | || | ||| || || || || | ||||||||| || ||| Sbjct 221540 TCGTATGGACCGTCCCGTGCAGCCAATTCGCAGCTTGCTTCCAGTGCTCCATAGTAGATG 221599 Query 71449 GTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAG 71508 ||||| || || | | ||| || | ||| || || ||| || ||||||| | Sbjct 221600 GTTTCAAATATTTGTTGATTCAGCTTTTGGGCCTCTTCGCTTTCGTATGGATAGCGCATT 221659 Query 71509 AGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTA 71568 | ||| ||||| || || | || || || || |||||||| || ||||| | | | || Sbjct 221660 AAAATGAACGCATCGGCCATGCCCTGCACACCGATACCGATGGGCCTGTGGCGCATGTTG 221719 Query 71569 GAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 71628 ||| | || || || | ||||| || || || || || ||||| || ||||| | Sbjct 221720 GAACGCTTCGCCTCCGGCACCGGATAGTAGTTTATGTCGATGATTTTGTTCAGATTGCGT 221779 Query 71629 ACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATC---TATTACA 71685 || || ||| | |||||||| || || | ||||| | ||| ||| | |||| Sbjct 221780 GTTACTATCTTGGCGACATCCTTCAGCTTTACGAAATCGTACGTCCTATCGGATTTTACG 221839 Query 71686 AACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCA--T 71743 |||| ||||| || | || |||||||| ||||| || | |||| | ||| | | Sbjct 221840 AACATGTTCAGTGCGATCGAGGCCAGATTGCAAACCGCAATTTCATC--CTTCGACGAGT 221897 Query 71744 ATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 71803 | | | ||| |||||||| | ||| |||||| ||||| || | || || || || | Sbjct 221898 ACTCCACAATCTCAGTGCACAAGTTAGAACACTTAATGGTGCCAATGTTCTGCTGGTTGC 221957 Query 71804 TCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATT 71863 | || ||| || |||||||| || || ||| |||| || ||||| | ||| |||| Sbjct 221958 TTTTGCGGTTGCATGCATCCTTGTACAGCATATACGGTACGCCCGTTTCCACCTGCGATT 222017 Query 71864 CTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTT 71923 | || ||||| ||| | | | ||||| | | | | ||| | | Sbjct 222018 CAATGATCGCGAACCACAAATCCTGTGCCTTCACCTGGCGAATAAAACGACCCTCTTTCT 222077 Query 71924 CGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATT 71983 |||| || || | | ||||||| || ||||| || || || ||||| | Sbjct 222078 CGTAGCCAGTGTACAGTGCCTCGAACTTTTCACCCCAGCTATCAGACAAACCGGGACAAT 222137 Query 71984 CATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAG 72043 | | || ||||| | |||| | | | | | || || | ||| || ||||| | Sbjct 222138 CGTGAGGGCACATTAGACTCCACATTTCGTTCGCCTCCACCCGCTCCATGAACAGATCCG 222197 Query 72044 GAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC---TCCTCGTTTCCTGTATTCT 72100 ||||||| | || |||| | || || || | | || ||||| || || || || | Sbjct 222198 GAATCCACAAGGCG-TAAA-ACATGTCGCGTGC-ACGCACCTCCTCTTTGCCGGTGTTTT 222254 Query 72101 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 72160 | || ||||| || ||| | | | |||| ||||||||||| | ||| ||||| | | Sbjct 222255 TCTTCAGATCCAGAAACTCGAACACATCACCGTGCCACGGTTCGAGGTAGATGGCAAAAG 222314 Query 72161 CTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 72220 ||||||| || ||||| || |||||||| | ||||| || || || || || || | || Sbjct 222315 CTCCCGGGCGCTTGTTGCCACCCTGATCCACGTATCGGGCCGTATTGTTGTACACGCGCA 222374 Query 72221 ACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCAC 72280 |||||| | | || || || ||||| || || ||||| || | || | || | Sbjct 222375 GCATTGGCACCAACCCGTTTGAAATTCCATTCGTGCCCGAGATGTACGTACCTTTCGCGC 222434 Query 72281 GAATAT--TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 72338 ||||| ||| || | | || ||||| || || ||| || || | ||| || | Sbjct 222435 GAATACAGTGCACGTTCA--GCCCAATTCCGCCAGCAGATTTTGAAATCAGTGCACACTG 222492 Query 72339 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 || | |||||| ||||| || || || || || ||| |||| | || | |||||| Sbjct 222493 CTTCAGCGTATCGTAGATACCTTCAATGCTGTCGTCCGACATGGTGAGCAAGAAACAGGA 222552 Query 72399 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 72458 |||| || |||| || |||| ||| | ||| || || || || ||||| | Sbjct 222553 CGACAACTGCGGACGTTGCGTAGCCGCCGCAAACATGGTCGGTGAGGCATGGGTAAAGTA 222612 Query 72459 TTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCC 72518 || || || |||||||| ||||| || |||| || || || ||| || || Sbjct 222613 GCGCTCCGAAAGCAGATTGTAAGTCTCGATTGCTGCATCGATGTCTTCACCATGAATGCC 222672 Query 72519 TACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAA 72578 | ||| || ||||| ||||||||||| |||| |||||||||||| || || ||||| Sbjct 222673 GATCGCAACGCGCATCAACATATGCTGCGGTCGCTCAACGATCTTGCCCTTGATCTTCAA 222732 Query 72579 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 72638 ||||||||| || |||||||| || || ||||||||||| ||| || || || || Sbjct 222733 CAAGTAGGACCGCTCTAAAGTTTTGAAGCCGAAATAGTTGTACCCAAAATCGCGATCATA 222792 Query 72639 AATAATAACCGAATTGAG 72656 ||| ||| ||||||| || Sbjct 222793 AATTATAGCCGAATTCAG 222810 >seq628 Length=1452984 Score = 111 bits (122), Expect = 2e-19 Identities = 180/257 (70%), Gaps = 3/257 (1%) Strand=Plus/Plus Query 42053 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTG 42112 |||||||||| || || || || ||||| || || ||||| | ||| | ||||| Sbjct 708174 TTAAACATCAGGCAGGCAAAGTCACAGTGTAGTCCTTCATCACGCGAAATCAGCTCGTTC 708233 Query 42113 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT 42172 || || || ||||| ||||| || |||||||| || ||||| || || | ||||| Sbjct 708234 GAGAAGGTAAGTCCCGGCATCAGTCCACGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTA 708293 Query 42173 CCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA 42232 || |||||||| ||||| || || ||||| || | | | ||| ||| | || Sbjct 708294 CCGCTGAAGAAGATACCTTCGACAGCAGCAAACGCGACGACACGCTCGCCAAAGTTTGCC 708353 Query 42233 CTGT--CATGT-ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 42289 | | | || ||||| || | ||||||||||||||||| || || || |||| |||| Sbjct 708354 TTCTTGCTTGAGATCCAGTTCAGTGCCCAATCGGCCTTCTTCTTCACGCACGGCAGCGTT 708413 Query 42290 TCTATGGCATTAAAGAG 42306 || || ||||| || || Sbjct 708414 TCAATTGCATTGAACAG 708430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671127522177920