Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq672 104 2e-17 seq628 93.3 4e-14 >seq672 Length=1102954 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| || | ||||| |||||||| || || |||||||| || || |||| Sbjct 391589 CGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGGCCA 391648 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 || || || || ||||| || |||| ||||| |||||||| || || || ||||| || Sbjct 391649 TCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATTCCTTCCTTA 391708 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||| ||| || | | ||| | |||||||| || || || |||| || | Sbjct 391709 TCCTGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATG 391768 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||||||| | |||||| ||||| || ||||| Sbjct 391769 GTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 391803 >seq628 Length=1452984 Score = 93.3 bits (102), Expect = 4e-14 Identities = 157/222 (71%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 50348 CGTGTGTGCGTAAAAAGGACGATTGGGCATTGAAATGGACTaaaaacaaaaaa-CTTACT 50406 |||| ||| || |||| |||||||||| |||| |||| || ||| || | ||| Sbjct 708405 CGTGCGTGAAGAAGAAGGCCGATTGGGCACTGAACTGGATCTCAAGCAAGAAGGCAAACT 708346 Query 50407 TTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTTT 50466 ||||| || ||| | || |||||||| || |||||| | || || |||||||||| Sbjct 708345 TTGGC-GAGCGTGTCGTCGCGTTTGCTGCTGTCGAAGGTATCTTCTTCAGCGGTAGCTTT 708287 Query 50467 GCAGCCATATTTTACATTAA-AACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACGA 50525 || ||||| || | | || || | | || | ||||| || || || || ||||| Sbjct 708286 GCCGCCATTTTCTGGCTGAAGAAGCGT-GGACTGATGCCGGGACTTACCTTCTCGAACGA 708228 Query 50526 GTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCGTG 50567 | |||||||||| || |||||| | ||| |||||||| || Sbjct 708227 GCTGATTTCGCGTGATGAAGGACTACACTGTGACTTTGCCTG 708186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507005577949440