Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq672 104 2e-17
seq628 93.3 4e-14
>seq672
Length=1102954
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029
|||| || | ||||| |||||||| || || |||||||| || || ||||
Sbjct 391589 CGCAGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGGCCA 391648
Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089
|| || || || ||||| || |||| ||||| |||||||| || || || ||||| ||
Sbjct 391649 TCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATTCCTTCCTTA 391708
Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149
|| ||| ||| || | | ||| | |||||||| || || || |||| || |
Sbjct 391709 TCCTGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATG 391768
Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
||||||||||| | |||||| ||||| || |||||
Sbjct 391769 GTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 391803
>seq628
Length=1452984
Score = 93.3 bits (102), Expect = 4e-14
Identities = 157/222 (71%), Gaps = 4/222 (2%)
Strand=Plus/Minus
Query 50348 CGTGTGTGCGTAAAAAGGACGATTGGGCATTGAAATGGACTaaaaacaaaaaa-CTTACT 50406
|||| ||| || |||| |||||||||| |||| |||| || ||| || | |||
Sbjct 708405 CGTGCGTGAAGAAGAAGGCCGATTGGGCACTGAACTGGATCTCAAGCAAGAAGGCAAACT 708346
Query 50407 TTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTTT 50466
||||| || ||| | || |||||||| || |||||| | || || ||||||||||
Sbjct 708345 TTGGC-GAGCGTGTCGTCGCGTTTGCTGCTGTCGAAGGTATCTTCTTCAGCGGTAGCTTT 708287
Query 50467 GCAGCCATATTTTACATTAA-AACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACGA 50525
|| ||||| || | | || || | | || | ||||| || || || || |||||
Sbjct 708286 GCCGCCATTTTCTGGCTGAAGAAGCGT-GGACTGATGCCGGGACTTACCTTCTCGAACGA 708228
Query 50526 GTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCGTG 50567
| |||||||||| || |||||| | ||| |||||||| ||
Sbjct 708227 GCTGATTTCGCGTGATGAAGGACTACACTGTGACTTTGCCTG 708186
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 507005577949440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |