Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq872 251 1e-61 seq727 212 9e-50 seq624 163 4e-35 seq628 123 4e-23 seq497 107 3e-18 >seq872 Length=887634 Score = 251 bits (278), Expect = 1e-61 Identities = 949/1462 (65%), Gaps = 50/1462 (3%) Strand=Plus/Minus Query 96831 GTGCCAATGCTCAGAATGTACAATGCAAT--GTCACGATACGTTACACAGGGCGGCAATA 96888 ||||||||||| | ||||||| |||| | | |||||||| ||||| ||||| | Sbjct 222384 GTGCCAATGCTGCGCGTGTACAA--CAATACGGCCCGATACGTGGATCAGGGTGGCAACA 222327 Query 96889 AACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTA 96948 | || || || ||| | ||| ||||| | ||||| ||||||| || || || || ||| Sbjct 222326 AGCGCCCGGGAGCTTTTGCCATCTACCTCGAACCGTGGCACGGTGATGTGTTCGAGTTTC 222267 Query 96949 TCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCAC 97008 | || || |||||| | ||| || |||| || || | ||| ||||||| || Sbjct 222266 TGGATCTGAAGAAAAACACCGGCAAAGAGGAGGTGCGTGCACGCGACATGTTTTACGCCT 222207 Query 97009 TCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTA-CTGGAGCCTAATG 97067 | ||| | || ||| |||||||| |||| || | | || | | ||||| |||||| Sbjct 222206 TGTGGATTCCGGATCTGTTCATGGAGCGGGTGGA-GGCGAACGAAATGTGGAGTCTAATG 222148 Query 97068 TGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTAC 97127 ||||| || | |||||| |||| ||| ||||||| ||| |||| ||||| |||| Sbjct 222147 TGCCCTCACGATTGTCCCGGTTTGTCTGATAGCTGGGGTGAAAAGTTCGAGGCACTGTAC 222088 Query 97128 ACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAG 97187 || | ||||||| ||||||| || | | | | || | |||| || ||||| Sbjct 222087 ACTGGCTACGAGAAAGAGGGTCGTTTTATTCGCCAGGTGAAGGCACAGGATTTGTGGTTC 222028 Query 97188 GCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTG 97247 || ||| | | ||||| || || || ||||| || || ||||||||| | Sbjct 222027 GCGATCATTGAATCGCAGGTGGAAACGGGCGTACCGTATATGCTGTACAAGGATGCATGC 221968 Query 97248 AATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAA 97307 || ||||| |||||||| | || | |||||||| ||| | || || ||||||| || Sbjct 221967 AACCGCAAAAGCAACCAGCAGAACATTGGCACCATTAAGTGTTCTAACTTGTGCACTGAG 221908 Query 97308 ATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTG 97367 ||||| |||||| | || ||| || | || |||||| |||||| ||| || ||| Sbjct 221907 ATTGTGGAGTACTCGTCGAAGGATGAAATTGCGGTTTGCAATCTGGCCTCGATCGCACTG 221848 Query 97368 CCCAAGTTTGTAGA---GGGTAAAGTGTTTAATCTC---AACCTATTGGCAAAGACGGTG 97421 || ||| ||| | | || || || || || || || | | || Sbjct 221847 AACATGTTCGTAAAATCCGATAGGACGTACGATTTCGTAAAGCTGAAGG--ATGTCGCCA 221790 Query 97422 CGTCTGGTGACTAGGAATCTAAACAAGATTATCGACAATGCACT-CTATCCCATTCCCTC 97480 | | || || | ||||| ||||| || |||||| || ||| |||||| | | | Sbjct 221789 AG-ATAGTAACACGCAATCTGAACAAAATCATCGAC-ATAAACTACTATCCGGTGC---C 221735 Query 97481 GGCTGCCAAG---TCAAACTTTAAGCACCGACCCATCGGTATAGGAGTGCAAGGCTACGC 97537 || || ||| || ||| | ||| | ||||||||||| || ||||| ||| || Sbjct 221734 GGAGGCGAAGCGTTCCAACATGCGCCACAGGCCCATCGGTATCGGTGTGCAGGGCATGGC 221675 Query 97538 AGACGCTCTGGCCATGATG-GGTATAGCCTACG-AGGACTCGATGC-----AGTTGAATC 97590 || || | | ||| | ||| | |||| | | || || || |||||| Sbjct 221674 CGATGCGTTCATTTTAATGCGCTAT-CCATACGAAAGCGAAGAGGCCCAAAAGCTGAATC 221616 Query 97591 GTGACATTTTCGAAACCATCTACCATGCAGCACTGACGGAGAGTTGCCAACTGGCCAGAG 97650 | || || |||||||||||| ||| ||||||| | || ||| || |||| | Sbjct 221615 AACAAATATTTGAAACCATCTACTATGGAGCACTGGAAGCAAGCTGCGAATTGGCTGCAC 221556 Query 97651 TGCACGGAGTCTACGAATCGTACCACGGTAGCCCGACCAGTCGTGGAGAGTTGCACTTC- 97709 | |||| ||||| |||| | ||| | ||||| | | | | || || | Sbjct 221555 GGGACGGTCCATACGAGACGTATGAAGGT----TGTCCAGT-GAGCAAGGGTGTCCTACA 221501 Query 97710 GACCGATACTCGGTGCACAG--CCAA---AAGTGTG--ACTGGTCATCGTTGCGCAAAGA 97762 | ||| | || || || || | | |||| ||||| || |||| | | Sbjct 221500 GTACGAAATGTGGAACAAAGAACCGACGGATCTGTGGAACTGGACAGAGTTGAAGGAGAA 221441 Query 97763 CATTGCTCGGTACGGTTTGAGAAACTCTTTGCTGGTGGCACCGATGCCCACGGCTACCAC 97822 ||||| | ||||| | | ||||| | ||| ||||||||||||| || ||| | || Sbjct 221440 GATTGCAAAGCACGGTATTCGTAACTCGCTACTGCTGGCACCGATGCCGACAGCTTCGAC 221381 Query 97823 TTCCCAAGTGTTTGGCAATGCTGAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAG 97882 | ||| | || ||||| ||| || || || |||| |||||| ||| | ||| | | Sbjct 221380 GGCACAAATATTGGGCAACAATGAGTCCTTCGAGCCGTACACGTCGAACGTTTACAACCG 221321 Query 97883 ACGCACCCAGTCTGGAGAGTTTCAATTGACCAACGTGCACTTGGTTCGAGACTTGGAACG 97942 ||| | || || ||||| || || ||| || || | | ||| | ||| Sbjct 221320 ACGTGTGCTATCGGGCGAGTTCCAGGTGGTGAACCATCATCTGCTGCAAGA--TCTAACA 221263 Query 97943 GC--TCAATCTGTGGAACGATGACATGGCCCAGTTGATCATGTACAACAATGGGTCCATT 98000 || | | ||||| | ||||||| | ||| ||| |||||| || || ||| Sbjct 221262 GCGATGGGTTTGTGGGATCTTGACATGAAGAACAACATCTTGTCCAACAACGGATCGATT 221203 Query 98001 CAAAACATTACCATC-ATCCCGGAAGAGTTGCGCAGAATCTACAAGACTGTCTGGGAGAT 98059 ||||||||| ||| || || | || | ||| | |||||||| || |||||||| Sbjct 221202 CAAAACATT-GAATCAATACCAAAGGAAATCCGCGACCTGTACAAGACGGTATGGGAGAT 221144 Query 98060 TCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCA 98119 || || || ||| | ||||| ||||| | || | | || || ||| || Sbjct 221143 CTCGGTGAAAACATCCATCAAAATGGCGGCCGATCGGGGAGCGTTTATCGATCAGTCACA 221084 Query 98120 ATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTA 98179 ||| || || | |||| |||||||| | ||| | |||| ||||| || || || Sbjct 221083 ATCATTTAACATACACGTGGCCGAGCCGAACTATGGCAAGCTGACGTCGATCCATTTCTA 221024 Query 98180 CGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAA 98239 ||| ||||| | ||| || ||||||||||||||||| ||| | || || ||||| || Sbjct 221023 CGCGTGGAAGATGGGACTAAAGACGGGCATGTACTACCTGCGCACCAAACCGGCCGTAAA 220964 Query 98240 TGCCATACCATTTACGGTGGAC 98261 |||||| | ||||||||||||| Sbjct 220963 TGCCATCCAATTTACGGTGGAC 220942 >seq727 Length=2413216 Score = 212 bits (234), Expect = 9e-50 Identities = 401/588 (68%), Gaps = 8/588 (1%) Strand=Plus/Plus Query 49794 TTACCGTGGAGCCTCCCATGTTTCTATACATGATGGCCTTCATGACGACCACGGTCATCG 49853 || |||| || ||| | ||||| || ||||||||||| || ||| ||| ||||| | | Sbjct 725224 TTTCCGTCGAACCTTCGATGTTCCTGTACATGATGGCGTTTATGCTGACATCGGTCGTAG 725283 Query 49854 AGCAGGCGTTTTACGTGTACCAAGCGTGCACCGTCAACCATGGCTACTCGCCAGAGGTGT 49913 |||| ||||| | | ||| ||||||| || ||| | ||||| || |||| || || | Sbjct 725284 AGCAAGCGTTCTTTCTCTACAAAGCGTGTACGGTCGATCATGGATATTCGCATGAAGTTT 725343 Query 49914 GCCACAACATTAGCCAGTACGATGACATCAACAACCGAGTCCAGCAGACTGTGTCTACAT 49973 ||| |||||| ||||| | ||||| || || | ||||||| ||| || || | Sbjct 725344 GCCTTAACATTGAACAGTATCAGGACATTAAAAAGCAAGTCCAGGTGACGACATCCACCT 725403 Query 49974 TTCATCAGTGGAACGGTGTAGCCAGTCATGTGGTGCCCTTTATATTGGCCTTTTTCCTAG 50033 |||||||||||||| | || | | ||||||||| | | ||||| || || || | Sbjct 725404 TTCATCAGTGGAACAACATTGCAATGTACGTGGTGCCCATCGTGTTGGCATTGTTTCTCG 725463 Query 50034 GATCCTATAGTGATAGGCGCGGTAGAAAGATTGTACTCGTATGTGGACTCGTAGGTAAAC 50093 | ||| ||| |||| ||| | || | || || |||||| | |||||| Sbjct 725464 GTGCCTGGTCGGATCGGCGTGGTCGCAAATTACCGCTGATACTGGGACTCATCGGTAAAT 725523 Query 50094 TCTTTTTCTCGGCAATGCTAACCGTAAACAGTCTCAAG---AGCTGGCCCGTAGAGTATA 50150 | | | |||| ||| | ||| |||| || | | ||||| || ||||||| Sbjct 725524 TTATCTACTCGATCATGATCGTCGTGAACACTCGTATGCCTTCGTGGCCGGTTGAGTATA 725583 Query 50151 TAATCTACACGGCATCCTTTCCGAGTGCACTCACCGGAGCCGATTTGACCATATTCGCAG 50210 | |||||||| ||| | | ||||||| ||| |||||||| ||| | |||| || ||| Sbjct 725584 TCATCTACACTGCAACGATCCCGAGTGTACTAACCGGAGCGGATATAGCCATCTTTGCAT 725643 Query 50211 CGTGCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGAATCGCACGCTACGAGTGGGCA 50270 |||||||||||||||| |||| | |||| ||||| | || || || || | | Sbjct 725644 CGTGCTTTGCCTACATCTCCGACATAACGACCGTGGAAGAACGTACACTGCGCATTACGA 725703 Query 50271 TCTTGGATGCCGTCTACCTGAGCACGATGCCAACCGGTGTGGCGATCGGTAGTGTGCTGT 50330 | ||||||| || || ||||| ||||| | |||||| || |||||| ||| | | Sbjct 725704 TACTGGATGCAACGTATCTTAGCACAATGCCGATCGGTGTCGCACTCGGTAATGTAATTT 725763 Query 50331 GGAAGCGATTCCG----ATCCTACCCCATCATGTTTGCAATCAATACG 50374 || | | | | ||| ||| | ||||||||||| |||||| || Sbjct 725764 TCAATC-ACACGGGAAAATCGTACACGATCATGTTTGCCATCAATGCG 725810 >seq624 Length=215519 Score = 163 bits (180), Expect = 4e-35 Identities = 380/572 (66%), Gaps = 12/572 (2%) Strand=Plus/Plus Query 127101 TTTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGT 127160 ||| ||| | || || || || || || || || | || ||||||||||| || ||| | Sbjct 197659 TTTCCGGAAGAAAATTACACCAGCACGCGGTCCACGCAGCGTCTTGTGCGTCGTCGTGCT 197718 Query 127161 CACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAAT 127220 || | || ||||| ||||| || || | | || | || ||||| || Sbjct 197719 GACCACATCTGCGTACTCGAAGGGAGACGGTATTATACCAGCGGCTACCAGGCCCGATAT 197778 Query 127221 GTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCT 127280 |||||| || || || | ||| | | || | | |||||| || |||||||| | Sbjct 197779 GTGTGCCATGTCAGCGAACAGATATGCACCATTTTGGTTGGCAATTTCGCGGAATCGCTT 197838 Query 127281 ATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAG 127340 || |||| | || | |||||| ||||||| ||||| | | |||||||| | Sbjct 197839 GTAATCCAGACAGCGCGAATAGCACGAAATGCCGGCAATGATCACTTTCGGTTTGAACAA 197898 Query 127341 ATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTA 127400 | || | || | | |||| | || |||| | || || ||||| |||||||| Sbjct 197899 ACGTGCCGTTTCCTCCATTTTGTCGTAATCGATCAACCCGGTTACGGGATCGACCTTGTA 197958 Query 127401 CGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA-------CGT-TGCG----GAATCC 127448 ||||||||||||||| |||| ||||| || || | ||| |||| ||| || Sbjct 197959 CGGCATGCTTTCGAAGAAGATGGATGTGGCCGAAATTTTCTTCGTCTGCGTCATGAAACC 198018 Query 127449 GTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAAC 127508 |||||| || ||||| ||||||||||||||||| ||||| || | |||||||||| || Sbjct 198019 GTGCGTTAGATGGCCACCGTCGGGCAGATCGAGCCCCATTATGCGGCCGTGCGGTTCAAT 198078 Query 127509 GATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCC 127568 | ||||||| || || ||||| || ||| ||||| |||||||| || || Sbjct 198079 CAACGCAGTGTAGACAGCGAAGTTTGCTGGCGACCCCGAATACGGTTGAACGTTGCAGCC 198138 Query 127569 CCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCGAT 127628 |||||| | ||| | | | | ||| | |||| || || | ||||||||| Sbjct 198139 CCATTCCTCCGGGTTTAGACGGTATGCTTCCAATGCGCGCTTTTGAGCCAACAGTTCGAT 198198 Query 127629 GCGATCGATAAACTCGTTACCACCATAGTATC 127660 || ||||| || ||||| || ||||||| Sbjct 198199 CTCGTCAATAAATTCATTACCTCCGTAGTATC 198230 >seq628 Length=1452984 Score = 123 bits (136), Expect = 4e-23 Identities = 197/279 (71%), Gaps = 13/279 (5%) Strand=Plus/Minus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 |||| | || || || ||||| || |||||||| ||||||||||||||| || | || | Sbjct 708794 AGGCGGAAGCTTCGTTCTGGACCGTGGAAGAGGTGGATCTGTCCAAGGACATGAAAGACT 708735 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTC 125153 |||| ||||| ||||| |||||| | ||||| |||||| | | |||||| Sbjct 708734 GGGAT--TCGTT-----GAAACCGAGCGAACGCCACTTTATCTCGCACGTACTTGCCTTC 708682 Query 125154 TTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTG 125213 ||||||| |||||||| ||||| ||||| || ||| | ||| ||| || ||| | Sbjct 708681 TTTGCCGCATCCGATGGCATCGTGAACGAAAACCTGGTCGAACGTTTCAGCCAGGAGGTA 708622 Query 125214 ACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTC 125272 | | || | ||| || |||||||| || ||||| ||| || || |||||| Sbjct 708621 CAGGTAACGGAAG-CTCGCTGTTTTTACGGCTTTCAAATAGCGATGGAAAATGTGCACAG 708563 Query 125273 GGAAATGTACTCTACACTGATTGACATGTACATTCGCGA 125311 || |||||||| || || |||| ||||||||| || Sbjct 708562 CGAGATGTACTCACTGCTAATCGACACGTACATTCGTGA 708524 Score = 118 bits (130), Expect = 2e-21 Identities = 233/341 (68%), Gaps = 13/341 (4%) Strand=Plus/Minus Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 || || || || || || || || |||||||| ||||| ||||| ||||| || ||| Sbjct 708331 GTCGCGTTTGCTGCTGTCGAAGGTATCTTCTTCAGCGGTAGCTTTGCCGCCATTTTCTGG 708272 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 || |||||||| ||||| ||||| ||||| || | |||||| | || || || || Sbjct 708271 CTGAAGAAGCGTGGACTGATGCCGGGACTTACCTTCTCGAACGAGCTGATTTCGCGTGAT 708212 Query 125550 GAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGC 125609 || || |||||||||||||||||| || ||||| || |||||| || | || | Sbjct 708211 GAAGGACTACACTGTGACTTTGCCTGCCTGATGTTT---AAGTATCTG-GTACAGAAACC 708156 Query 125610 --AGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667 || |||| | | || ||||| | | ||||| || || || || | Sbjct 708155 TTCGAAGGAGCG-CGTGACGGCCATCATCCGT------GATGCGGTTGCAATCGAGCAGG 708103 Query 125668 AGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727 | ||| | || || | || || ||| ||| | || ||||||||| | || |||| Sbjct 708102 AATTTTTGACGAAAGCACTGCCAGTCGATATGCTCGGTATGAACTGCGATCTGATGTCAC 708043 Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG 125768 ||||||| ||||| || || |||||| | |||| |||||| Sbjct 708042 AGTACATTGAGTTCGTAGCCGATCGTTTGCTGTTGGAGTTG 708002 >seq497 Length=402095 Score = 107 bits (118), Expect = 3e-18 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 70211 ATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCAC 70270 ||| | ||| || | ||||||||| | ||| | | | | ||||| |||| ||||||||| Sbjct 124069 ATCATCATGAGCGCTTGGAATCCTTCCGATATTCCCAACATGGCCTTACCGCCGTGTCAC 124128 Query 70271 TGTTTGGCTCAGTTTTACTCGT--ACGATGGCAAATTGTCATGCTTAATGTATCAGAGGA 70328 || ||||| ||||||| | || | |||| | ||||| ||| ||||||||| | Sbjct 124129 TGCTTGGCACAGTTTT--TTGTTGGCAATGGAGAGTTGTCTTGCCAGATGTATCAGCGAT 124186 Query 70329 GTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACA 70388 || || | || | ||||| || ||||||||||| ||||| ||| || |||| || | Sbjct 124187 CGGCTGATGTAGGATTGGGTGTTCCGTTTAACATTGCTAGCTACTCTTTGCTGACCCATA 124246 Query 70389 TGATTGCTCACATTACCGGCCTGAA 70413 |||| || || |||| || ||||| Sbjct 124247 TGATCGCCCATGTTACTGGACTGAA 124271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741046305569920