Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq872 251 1e-61
seq727 212 9e-50
seq624 163 4e-35
seq628 123 4e-23
seq497 107 3e-18
>seq872
Length=887634
Score = 251 bits (278), Expect = 1e-61
Identities = 949/1462 (65%), Gaps = 50/1462 (3%)
Strand=Plus/Minus
Query 96831 GTGCCAATGCTCAGAATGTACAATGCAAT--GTCACGATACGTTACACAGGGCGGCAATA 96888
||||||||||| | ||||||| |||| | | |||||||| ||||| ||||| |
Sbjct 222384 GTGCCAATGCTGCGCGTGTACAA--CAATACGGCCCGATACGTGGATCAGGGTGGCAACA 222327
Query 96889 AACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTA 96948
| || || || ||| | ||| ||||| | ||||| ||||||| || || || || |||
Sbjct 222326 AGCGCCCGGGAGCTTTTGCCATCTACCTCGAACCGTGGCACGGTGATGTGTTCGAGTTTC 222267
Query 96949 TCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCAC 97008
| || || |||||| | ||| || |||| || || | ||| ||||||| ||
Sbjct 222266 TGGATCTGAAGAAAAACACCGGCAAAGAGGAGGTGCGTGCACGCGACATGTTTTACGCCT 222207
Query 97009 TCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTA-CTGGAGCCTAATG 97067
| ||| | || ||| |||||||| |||| || | | || | | ||||| ||||||
Sbjct 222206 TGTGGATTCCGGATCTGTTCATGGAGCGGGTGGA-GGCGAACGAAATGTGGAGTCTAATG 222148
Query 97068 TGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTAC 97127
||||| || | |||||| |||| ||| ||||||| ||| |||| ||||| ||||
Sbjct 222147 TGCCCTCACGATTGTCCCGGTTTGTCTGATAGCTGGGGTGAAAAGTTCGAGGCACTGTAC 222088
Query 97128 ACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAG 97187
|| | ||||||| ||||||| || | | | | || | |||| || |||||
Sbjct 222087 ACTGGCTACGAGAAAGAGGGTCGTTTTATTCGCCAGGTGAAGGCACAGGATTTGTGGTTC 222028
Query 97188 GCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTG 97247
|| ||| | | ||||| || || || ||||| || || ||||||||| |
Sbjct 222027 GCGATCATTGAATCGCAGGTGGAAACGGGCGTACCGTATATGCTGTACAAGGATGCATGC 221968
Query 97248 AATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAA 97307
|| ||||| |||||||| | || | |||||||| ||| | || || ||||||| ||
Sbjct 221967 AACCGCAAAAGCAACCAGCAGAACATTGGCACCATTAAGTGTTCTAACTTGTGCACTGAG 221908
Query 97308 ATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTG 97367
||||| |||||| | || ||| || | || |||||| |||||| ||| || |||
Sbjct 221907 ATTGTGGAGTACTCGTCGAAGGATGAAATTGCGGTTTGCAATCTGGCCTCGATCGCACTG 221848
Query 97368 CCCAAGTTTGTAGA---GGGTAAAGTGTTTAATCTC---AACCTATTGGCAAAGACGGTG 97421
|| ||| ||| | | || || || || || || || | | ||
Sbjct 221847 AACATGTTCGTAAAATCCGATAGGACGTACGATTTCGTAAAGCTGAAGG--ATGTCGCCA 221790
Query 97422 CGTCTGGTGACTAGGAATCTAAACAAGATTATCGACAATGCACT-CTATCCCATTCCCTC 97480
| | || || | ||||| ||||| || |||||| || ||| |||||| | | |
Sbjct 221789 AG-ATAGTAACACGCAATCTGAACAAAATCATCGAC-ATAAACTACTATCCGGTGC---C 221735
Query 97481 GGCTGCCAAG---TCAAACTTTAAGCACCGACCCATCGGTATAGGAGTGCAAGGCTACGC 97537
|| || ||| || ||| | ||| | ||||||||||| || ||||| ||| ||
Sbjct 221734 GGAGGCGAAGCGTTCCAACATGCGCCACAGGCCCATCGGTATCGGTGTGCAGGGCATGGC 221675
Query 97538 AGACGCTCTGGCCATGATG-GGTATAGCCTACG-AGGACTCGATGC-----AGTTGAATC 97590
|| || | | ||| | ||| | |||| | | || || || ||||||
Sbjct 221674 CGATGCGTTCATTTTAATGCGCTAT-CCATACGAAAGCGAAGAGGCCCAAAAGCTGAATC 221616
Query 97591 GTGACATTTTCGAAACCATCTACCATGCAGCACTGACGGAGAGTTGCCAACTGGCCAGAG 97650
| || || |||||||||||| ||| ||||||| | || ||| || |||| |
Sbjct 221615 AACAAATATTTGAAACCATCTACTATGGAGCACTGGAAGCAAGCTGCGAATTGGCTGCAC 221556
Query 97651 TGCACGGAGTCTACGAATCGTACCACGGTAGCCCGACCAGTCGTGGAGAGTTGCACTTC- 97709
| |||| ||||| |||| | ||| | ||||| | | | | || || |
Sbjct 221555 GGGACGGTCCATACGAGACGTATGAAGGT----TGTCCAGT-GAGCAAGGGTGTCCTACA 221501
Query 97710 GACCGATACTCGGTGCACAG--CCAA---AAGTGTG--ACTGGTCATCGTTGCGCAAAGA 97762
| ||| | || || || || | | |||| ||||| || |||| | |
Sbjct 221500 GTACGAAATGTGGAACAAAGAACCGACGGATCTGTGGAACTGGACAGAGTTGAAGGAGAA 221441
Query 97763 CATTGCTCGGTACGGTTTGAGAAACTCTTTGCTGGTGGCACCGATGCCCACGGCTACCAC 97822
||||| | ||||| | | ||||| | ||| ||||||||||||| || ||| | ||
Sbjct 221440 GATTGCAAAGCACGGTATTCGTAACTCGCTACTGCTGGCACCGATGCCGACAGCTTCGAC 221381
Query 97823 TTCCCAAGTGTTTGGCAATGCTGAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAG 97882
| ||| | || ||||| ||| || || || |||| |||||| ||| | ||| | |
Sbjct 221380 GGCACAAATATTGGGCAACAATGAGTCCTTCGAGCCGTACACGTCGAACGTTTACAACCG 221321
Query 97883 ACGCACCCAGTCTGGAGAGTTTCAATTGACCAACGTGCACTTGGTTCGAGACTTGGAACG 97942
||| | || || ||||| || || ||| || || | | ||| | |||
Sbjct 221320 ACGTGTGCTATCGGGCGAGTTCCAGGTGGTGAACCATCATCTGCTGCAAGA--TCTAACA 221263
Query 97943 GC--TCAATCTGTGGAACGATGACATGGCCCAGTTGATCATGTACAACAATGGGTCCATT 98000
|| | | ||||| | ||||||| | ||| ||| |||||| || || |||
Sbjct 221262 GCGATGGGTTTGTGGGATCTTGACATGAAGAACAACATCTTGTCCAACAACGGATCGATT 221203
Query 98001 CAAAACATTACCATC-ATCCCGGAAGAGTTGCGCAGAATCTACAAGACTGTCTGGGAGAT 98059
||||||||| ||| || || | || | ||| | |||||||| || ||||||||
Sbjct 221202 CAAAACATT-GAATCAATACCAAAGGAAATCCGCGACCTGTACAAGACGGTATGGGAGAT 221144
Query 98060 TCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCA 98119
|| || || ||| | ||||| ||||| | || | | || || ||| ||
Sbjct 221143 CTCGGTGAAAACATCCATCAAAATGGCGGCCGATCGGGGAGCGTTTATCGATCAGTCACA 221084
Query 98120 ATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTA 98179
||| || || | |||| |||||||| | ||| | |||| ||||| || || ||
Sbjct 221083 ATCATTTAACATACACGTGGCCGAGCCGAACTATGGCAAGCTGACGTCGATCCATTTCTA 221024
Query 98180 CGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAA 98239
||| ||||| | ||| || ||||||||||||||||| ||| | || || ||||| ||
Sbjct 221023 CGCGTGGAAGATGGGACTAAAGACGGGCATGTACTACCTGCGCACCAAACCGGCCGTAAA 220964
Query 98240 TGCCATACCATTTACGGTGGAC 98261
|||||| | |||||||||||||
Sbjct 220963 TGCCATCCAATTTACGGTGGAC 220942
>seq727
Length=2413216
Score = 212 bits (234), Expect = 9e-50
Identities = 401/588 (68%), Gaps = 8/588 (1%)
Strand=Plus/Plus
Query 49794 TTACCGTGGAGCCTCCCATGTTTCTATACATGATGGCCTTCATGACGACCACGGTCATCG 49853
|| |||| || ||| | ||||| || ||||||||||| || ||| ||| ||||| | |
Sbjct 725224 TTTCCGTCGAACCTTCGATGTTCCTGTACATGATGGCGTTTATGCTGACATCGGTCGTAG 725283
Query 49854 AGCAGGCGTTTTACGTGTACCAAGCGTGCACCGTCAACCATGGCTACTCGCCAGAGGTGT 49913
|||| ||||| | | ||| ||||||| || ||| | ||||| || |||| || || |
Sbjct 725284 AGCAAGCGTTCTTTCTCTACAAAGCGTGTACGGTCGATCATGGATATTCGCATGAAGTTT 725343
Query 49914 GCCACAACATTAGCCAGTACGATGACATCAACAACCGAGTCCAGCAGACTGTGTCTACAT 49973
||| |||||| ||||| | ||||| || || | ||||||| ||| || || |
Sbjct 725344 GCCTTAACATTGAACAGTATCAGGACATTAAAAAGCAAGTCCAGGTGACGACATCCACCT 725403
Query 49974 TTCATCAGTGGAACGGTGTAGCCAGTCATGTGGTGCCCTTTATATTGGCCTTTTTCCTAG 50033
|||||||||||||| | || | | ||||||||| | | ||||| || || || |
Sbjct 725404 TTCATCAGTGGAACAACATTGCAATGTACGTGGTGCCCATCGTGTTGGCATTGTTTCTCG 725463
Query 50034 GATCCTATAGTGATAGGCGCGGTAGAAAGATTGTACTCGTATGTGGACTCGTAGGTAAAC 50093
| ||| ||| |||| ||| | || | || || |||||| | ||||||
Sbjct 725464 GTGCCTGGTCGGATCGGCGTGGTCGCAAATTACCGCTGATACTGGGACTCATCGGTAAAT 725523
Query 50094 TCTTTTTCTCGGCAATGCTAACCGTAAACAGTCTCAAG---AGCTGGCCCGTAGAGTATA 50150
| | | |||| ||| | ||| |||| || | | ||||| || |||||||
Sbjct 725524 TTATCTACTCGATCATGATCGTCGTGAACACTCGTATGCCTTCGTGGCCGGTTGAGTATA 725583
Query 50151 TAATCTACACGGCATCCTTTCCGAGTGCACTCACCGGAGCCGATTTGACCATATTCGCAG 50210
| |||||||| ||| | | ||||||| ||| |||||||| ||| | |||| || |||
Sbjct 725584 TCATCTACACTGCAACGATCCCGAGTGTACTAACCGGAGCGGATATAGCCATCTTTGCAT 725643
Query 50211 CGTGCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGAATCGCACGCTACGAGTGGGCA 50270
|||||||||||||||| |||| | |||| ||||| | || || || || | |
Sbjct 725644 CGTGCTTTGCCTACATCTCCGACATAACGACCGTGGAAGAACGTACACTGCGCATTACGA 725703
Query 50271 TCTTGGATGCCGTCTACCTGAGCACGATGCCAACCGGTGTGGCGATCGGTAGTGTGCTGT 50330
| ||||||| || || ||||| ||||| | |||||| || |||||| ||| | |
Sbjct 725704 TACTGGATGCAACGTATCTTAGCACAATGCCGATCGGTGTCGCACTCGGTAATGTAATTT 725763
Query 50331 GGAAGCGATTCCG----ATCCTACCCCATCATGTTTGCAATCAATACG 50374
|| | | | | ||| ||| | ||||||||||| |||||| ||
Sbjct 725764 TCAATC-ACACGGGAAAATCGTACACGATCATGTTTGCCATCAATGCG 725810
>seq624
Length=215519
Score = 163 bits (180), Expect = 4e-35
Identities = 380/572 (66%), Gaps = 12/572 (2%)
Strand=Plus/Plus
Query 127101 TTTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGT 127160
||| ||| | || || || || || || || || | || ||||||||||| || ||| |
Sbjct 197659 TTTCCGGAAGAAAATTACACCAGCACGCGGTCCACGCAGCGTCTTGTGCGTCGTCGTGCT 197718
Query 127161 CACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAAT 127220
|| | || ||||| ||||| || || | | || | || ||||| ||
Sbjct 197719 GACCACATCTGCGTACTCGAAGGGAGACGGTATTATACCAGCGGCTACCAGGCCCGATAT 197778
Query 127221 GTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCT 127280
|||||| || || || | ||| | | || | | |||||| || |||||||| |
Sbjct 197779 GTGTGCCATGTCAGCGAACAGATATGCACCATTTTGGTTGGCAATTTCGCGGAATCGCTT 197838
Query 127281 ATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAG 127340
|| |||| | || | |||||| ||||||| ||||| | | |||||||| |
Sbjct 197839 GTAATCCAGACAGCGCGAATAGCACGAAATGCCGGCAATGATCACTTTCGGTTTGAACAA 197898
Query 127341 ATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTA 127400
| || | || | | |||| | || |||| | || || ||||| ||||||||
Sbjct 197899 ACGTGCCGTTTCCTCCATTTTGTCGTAATCGATCAACCCGGTTACGGGATCGACCTTGTA 197958
Query 127401 CGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA-------CGT-TGCG----GAATCC 127448
||||||||||||||| |||| ||||| || || | ||| |||| ||| ||
Sbjct 197959 CGGCATGCTTTCGAAGAAGATGGATGTGGCCGAAATTTTCTTCGTCTGCGTCATGAAACC 198018
Query 127449 GTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAAC 127508
|||||| || ||||| ||||||||||||||||| ||||| || | |||||||||| ||
Sbjct 198019 GTGCGTTAGATGGCCACCGTCGGGCAGATCGAGCCCCATTATGCGGCCGTGCGGTTCAAT 198078
Query 127509 GATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCC 127568
| ||||||| || || ||||| || ||| ||||| |||||||| || ||
Sbjct 198079 CAACGCAGTGTAGACAGCGAAGTTTGCTGGCGACCCCGAATACGGTTGAACGTTGCAGCC 198138
Query 127569 CCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCGAT 127628
|||||| | ||| | | | | ||| | |||| || || | |||||||||
Sbjct 198139 CCATTCCTCCGGGTTTAGACGGTATGCTTCCAATGCGCGCTTTTGAGCCAACAGTTCGAT 198198
Query 127629 GCGATCGATAAACTCGTTACCACCATAGTATC 127660
|| ||||| || ||||| || |||||||
Sbjct 198199 CTCGTCAATAAATTCATTACCTCCGTAGTATC 198230
>seq628
Length=1452984
Score = 123 bits (136), Expect = 4e-23
Identities = 197/279 (71%), Gaps = 13/279 (5%)
Strand=Plus/Minus
Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097
|||| | || || || ||||| || |||||||| ||||||||||||||| || | || |
Sbjct 708794 AGGCGGAAGCTTCGTTCTGGACCGTGGAAGAGGTGGATCTGTCCAAGGACATGAAAGACT 708735
Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTC 125153
|||| ||||| ||||| |||||| | ||||| |||||| | | ||||||
Sbjct 708734 GGGAT--TCGTT-----GAAACCGAGCGAACGCCACTTTATCTCGCACGTACTTGCCTTC 708682
Query 125154 TTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTG 125213
||||||| |||||||| ||||| ||||| || ||| | ||| ||| || ||| |
Sbjct 708681 TTTGCCGCATCCGATGGCATCGTGAACGAAAACCTGGTCGAACGTTTCAGCCAGGAGGTA 708622
Query 125214 ACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTC 125272
| | || | ||| || |||||||| || ||||| ||| || || ||||||
Sbjct 708621 CAGGTAACGGAAG-CTCGCTGTTTTTACGGCTTTCAAATAGCGATGGAAAATGTGCACAG 708563
Query 125273 GGAAATGTACTCTACACTGATTGACATGTACATTCGCGA 125311
|| |||||||| || || |||| ||||||||| ||
Sbjct 708562 CGAGATGTACTCACTGCTAATCGACACGTACATTCGTGA 708524
Score = 118 bits (130), Expect = 2e-21
Identities = 233/341 (68%), Gaps = 13/341 (4%)
Strand=Plus/Minus
Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489
|| || || || || || || || |||||||| ||||| ||||| ||||| || |||
Sbjct 708331 GTCGCGTTTGCTGCTGTCGAAGGTATCTTCTTCAGCGGTAGCTTTGCCGCCATTTTCTGG 708272
Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549
|| |||||||| ||||| ||||| ||||| || | |||||| | || || || ||
Sbjct 708271 CTGAAGAAGCGTGGACTGATGCCGGGACTTACCTTCTCGAACGAGCTGATTTCGCGTGAT 708212
Query 125550 GAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGC 125609
|| || |||||||||||||||||| || ||||| || |||||| || | || |
Sbjct 708211 GAAGGACTACACTGTGACTTTGCCTGCCTGATGTTT---AAGTATCTG-GTACAGAAACC 708156
Query 125610 --AGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667
|| |||| | | || ||||| | | ||||| || || || || |
Sbjct 708155 TTCGAAGGAGCG-CGTGACGGCCATCATCCGT------GATGCGGTTGCAATCGAGCAGG 708103
Query 125668 AGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727
| ||| | || || | || || ||| ||| | || ||||||||| | || ||||
Sbjct 708102 AATTTTTGACGAAAGCACTGCCAGTCGATATGCTCGGTATGAACTGCGATCTGATGTCAC 708043
Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG 125768
||||||| ||||| || || |||||| | |||| ||||||
Sbjct 708042 AGTACATTGAGTTCGTAGCCGATCGTTTGCTGTTGGAGTTG 708002
>seq497
Length=402095
Score = 107 bits (118), Expect = 3e-18
Identities = 148/205 (72%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 70211 ATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCAC 70270
||| | ||| || | ||||||||| | ||| | | | | ||||| |||| |||||||||
Sbjct 124069 ATCATCATGAGCGCTTGGAATCCTTCCGATATTCCCAACATGGCCTTACCGCCGTGTCAC 124128
Query 70271 TGTTTGGCTCAGTTTTACTCGT--ACGATGGCAAATTGTCATGCTTAATGTATCAGAGGA 70328
|| ||||| ||||||| | || | |||| | ||||| ||| ||||||||| |
Sbjct 124129 TGCTTGGCACAGTTTT--TTGTTGGCAATGGAGAGTTGTCTTGCCAGATGTATCAGCGAT 124186
Query 70329 GTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACA 70388
|| || | || | ||||| || ||||||||||| ||||| ||| || |||| || |
Sbjct 124187 CGGCTGATGTAGGATTGGGTGTTCCGTTTAACATTGCTAGCTACTCTTTGCTGACCCATA 124246
Query 70389 TGATTGCTCACATTACCGGCCTGAA 70413
|||| || || |||| || |||||
Sbjct 124247 TGATCGCCCATGTTACTGGACTGAA 124271
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741046305569920
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