Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq628 96.9 3e-15 >seq628 Length=1452984 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 13133 AGATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGC 13192 |||| ||||||||||| || ||||| |||||||| | ||||||||| | || ||| Sbjct 708168 AGATACTTAAACATCAGGCAGGCAAAGTCACAGTGTAGTCCTTCATCACGCGAAATCAGC 708227 Query 13193 TCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA 13252 ||||| || || || || |||||||| || || || || || | ||| || || || ||| Sbjct 708228 TCGTTCGAGAAGGTAAGTCCCGGCATCAGTCCACGCTTCTTCAGCCAGAAAATGGCGGCA 708287 Query 13253 AACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGC 13293 || ||| || || || ||||| || || |||||||| Sbjct 708288 AAGCTACCGCTGAAGAAGATACCTTCGACAGCAGCAAACGC 708328 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 13462 ATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGA 13521 |||||||||||||||||| || || |||||||| | ||| || | |||||| || || Sbjct 708571 ATTTTCCATCGCTATTTGAAAGCCGTAAAAACAGCGAGCTTCCGTTACCTGTACCTCCTG 708630 Query 13522 GTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAG 13581 | || | ||| | | ||||||||| || || || || || ||||| || ||||| Sbjct 708631 GCTGAAACGTTCGACCAGGTTTTCGTTCACGATGCCATCGGATGCGGCAAAGAAGGCAAG 708690 Query 13582 TATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATCTTT 13641 || |||| ||||| | |||| | | |||| ||| ||| | || || Sbjct 708691 TACGTGCGAGATAAAGTGGCGTTCGCTCGGTTTCAACGAATCCCAGTCTTTCATGTCCTT 708750 Query 13642 TGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCT 13685 || | ||| ||||| || |||||||| || ||||| | |||| Sbjct 708751 GGACAGATCCACCTCTTCCACGGTCCAGAACGAAGCTTCCGCCT 708794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430975088383584