Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq949 159 8e-34
seq672 158 3e-33
seq628 145 2e-29
seq575 132 1e-25
seq552 84.2 5e-11
>seq949
Length=1771395
Score = 159 bits (176), Expect = 8e-34
Identities = 174/231 (75%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391
||| || | ||| | ||| || ||||| | || ||||| ||||||||||| ||||| ||
Sbjct 446669 TCCACCACGTAGACGAAGGACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAGTCCGA 446728
Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451
|| || | || ||||| | || || |||||||| || || | ||| ||||| || ||
Sbjct 446729 CAGCGTACGGCCATCTTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGTGG 446788
Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511
||||| || |||||||||||||| || || ||||| || | ||||||| || || ||
Sbjct 446789 GATTCCCTCCTTATCCTGAATCTTGGCCTTAACATTCTCGATGGTATCGGATGGCTCAAC 446848
Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
||| || || || ||||| ||||| || || || || || |||||||||||
Sbjct 446849 CTCCAGGGTGATCGTCTTTCCAGTTAGAGTCTTGACGAAGATCTGCATTTT 446899
>seq672
Length=1102954
Score = 158 bits (174), Expect = 3e-33
Identities = 162/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || ||||| | |||||||| |||||||| || ||||| || ||||| | || ||
Sbjct 391592 AGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGGCCATCC 391651
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| || || || || || || || || | ||| ||||| || || |||||||| ||||||
Sbjct 391652 TCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATTCCTTCCTTATCC 391711
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
||||||||||| || |||||||| | || || ||| || ||||| ||||| || |||
Sbjct 391712 TGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTC 391771
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || || |||||||| || || ||||||||
Sbjct 391772 TTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 391803
>seq628
Length=1452984
Score = 145 bits (160), Expect = 2e-29
Identities = 235/329 (71%), Gaps = 8/329 (2%)
Strand=Plus/Plus
Query 238561 AGCTCGAGAGAGCCGAAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAA 238620
|||| || | ||| |||| ||||| || ||||| || |||||| | || |||||||
Sbjct 270507 AGCTGGAAACGGCCAAAACGCACGACGATCTTTGGAACTCGGCCCAGCTGCAGATGGTAA 270566
Query 238621 GACTAGGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGA 238680
|| |||||||| | || || | ||||| ||||| ||||||||||| || ||||
Sbjct 270567 AGGAGGGTAAAATGCACGGCTTTCTAAGGATGTACTGGGCCAAAAAGATACTCGAGTGGA 270626
Query 238681 CTAGATCTCCAAAGGAAGCTCTTAGATATAG-TATTTATCTGAACGATAAATACGAACTC 238739
| | | | || ||||||| ||| || | | || |||||||||||| ||| ||
Sbjct 270627 CAAAAACGCCCGAGGAAGCGCTT-GAAACGGCCATCTATCTGAACGATCGGTACAGTCTG 270685
Query 238740 GACGGTACG-GATCCTAACGGATACGTAGGTTGTATGTGGTCAATATGTGG--ATTACAC 238796
|| || ||| ||||| ||||| ||||| ||||| |||||||| || || || ||| |||
Sbjct 270686 GATGG-ACGCGATCCGAACGGTTACGTCGGTTGCATGTGGTCGAT-TGCGGGCATT-CAC 270742
Query 238797 GATAGGGCATGGTCTGAGAGACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGGA 238856
||| || |||| ||| | || || || ||| |||| |||||||| |||||||||
Sbjct 270743 GATCAGGGATGGAAGGAGCGTGAAATTTTCGGCAAAATTAGGTACATGAACTATGAAGGA 270802
Query 238857 ACTAAGAAAAAATTTGATGTAAATGCTTT 238885
||| |||||| | || ||||| ||
Sbjct 270803 TGCAAGCGTAAATTTAACGTCAATGCGTT 270831
Score = 104 bits (114), Expect = 5e-17
Identities = 183/267 (69%), Gaps = 0/267 (0%)
Strand=Plus/Minus
Query 268750 ACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGA 268809
|||||| | ||||| || ||||| || ||||| || |||||||| | ||| | | |||
Sbjct 708796 ACAGGCGGAAGCTTCGTTCTGGACCGTGGAAGAGGTGGATCTGTCCAAGGACATGAAAGA 708737
Query 268810 TTGGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGC 268869
||| | || ||||| ||| | ||||| || | | ||||| || |||||
Sbjct 708736 CTGGGATTCGTTGAAACCGAGCGAACGCCACTTTATCTCGCACGTACTTGCCTTCTTTGC 708677
Query 268870 AGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGAT 268929
| ||||| ||||| |||||||| || || || ||| | || ||||||||| |
Sbjct 708676 CGCATCCGATGGCATCGTGAACGAAAACCTGGTCGAACGTTTCAGCCAGGAGGTACAGGT 708617
Query 268930 TCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGAT 268989
| ||||| | ||||||||||| || || ||||| || |||||| | || |||||
Sbjct 708616 AACGGAAGCTCGCTGTTTTTACGGCTTTCAAATAGCGATGGAAAATGTGCACAGCGAGAT 708557
Query 268990 GTACAGTCTATTAATAGATACTTATAT 269016
|||| || |||| || || || ||
Sbjct 708556 GTACTCACTGCTAATCGACACGTACAT 708530
>seq575
Length=281738
Score = 132 bits (146), Expect = 1e-25
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || ||||| | || || || |||||||| ||||||||||| || || | || ||
Sbjct 24158 AAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGACAGTGTGCGTCCATC 24099
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| || || || || || || || | | ||| ||||| || || || || || |||||
Sbjct 24098 CTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCCTTATC 24039
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
||| ||||| || || ||||| || | ||||| || || ||||| || ||||||||
Sbjct 24038 CTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATAGT 23979
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|||||| || || ||||| || || ||||||||
Sbjct 23978 CTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 23946
>seq552
Length=280564
Score = 84.2 bits (92), Expect = 5e-11
Identities = 115/161 (71%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 165275 AAACCTTTACTTTTCTGTCCAGCTATGAATACACTTATGTGGGAACATCCTATTACTGAG 165334
||||| || |||||||| || || ||||| || | ||||||| ||||||| ||||| ||
Sbjct 109766 AAACCATTGCTTTTCTGCCCGGCCATGAACACGCGTATGTGGCAACATCCGATTACCGAA 109825
Query 165335 CAGCATATAGAAACTCTTAAGCATATGGGGTACATAGAAGTTGAGTGTATTGAGAAAAAG 165394
| || |||| ||| || ||| ||| || ||| | |||||| | |||||
Sbjct 109826 CTTCAAATAGCAACGCTAAAGTCCTGGGGCCACCGAGAGATACCGTGTATCGCGAAAACA 109885
Query 165395 CTAGCTTGTGGTGATATTGGAAAAGGTGCCATGGCAGAAGT 165435
|| |||||||||| ||| ||||| |||||||||||
Sbjct 109886 CTCATGTGTGGTGATACGGGAGTGGGTGCGATGGCAGAAGT 109926
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151377864809536
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |