Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq949 159 8e-34 seq672 158 3e-33 seq628 145 2e-29 seq575 132 1e-25 seq552 84.2 5e-11 >seq949 Length=1771395 Score = 159 bits (176), Expect = 8e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| || | ||| | ||| || ||||| | || ||||| ||||||||||| ||||| || Sbjct 446669 TCCACCACGTAGACGAAGGACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAGTCCGA 446728 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || || | || ||||| | || || |||||||| || || | ||| ||||| || || Sbjct 446729 CAGCGTACGGCCATCTTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGTGG 446788 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 ||||| || |||||||||||||| || || ||||| || | ||||||| || || || Sbjct 446789 GATTCCCTCCTTATCCTGAATCTTGGCCTTAACATTCTCGATGGTATCGGATGGCTCAAC 446848 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||| || || || ||||| ||||| || || || || || ||||||||||| Sbjct 446849 CTCCAGGGTGATCGTCTTTCCAGTTAGAGTCTTGACGAAGATCTGCATTTT 446899 >seq672 Length=1102954 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | |||||||| |||||||| || ||||| || ||||| | || || Sbjct 391592 AGCACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGGCCATCC 391651 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || || || || || | ||| ||||| || || |||||||| |||||| Sbjct 391652 TCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATTCCTTCCTTATCC 391711 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||||||||| || |||||||| | || || ||| || ||||| ||||| || ||| Sbjct 391712 TGAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTC 391771 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || |||||||| || || |||||||| Sbjct 391772 TTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 391803 >seq628 Length=1452984 Score = 145 bits (160), Expect = 2e-29 Identities = 235/329 (71%), Gaps = 8/329 (2%) Strand=Plus/Plus Query 238561 AGCTCGAGAGAGCCGAAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAA 238620 |||| || | ||| |||| ||||| || ||||| || |||||| | || ||||||| Sbjct 270507 AGCTGGAAACGGCCAAAACGCACGACGATCTTTGGAACTCGGCCCAGCTGCAGATGGTAA 270566 Query 238621 GACTAGGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGA 238680 || |||||||| | || || | ||||| ||||| ||||||||||| || |||| Sbjct 270567 AGGAGGGTAAAATGCACGGCTTTCTAAGGATGTACTGGGCCAAAAAGATACTCGAGTGGA 270626 Query 238681 CTAGATCTCCAAAGGAAGCTCTTAGATATAG-TATTTATCTGAACGATAAATACGAACTC 238739 | | | | || ||||||| ||| || | | || |||||||||||| ||| || Sbjct 270627 CAAAAACGCCCGAGGAAGCGCTT-GAAACGGCCATCTATCTGAACGATCGGTACAGTCTG 270685 Query 238740 GACGGTACG-GATCCTAACGGATACGTAGGTTGTATGTGGTCAATATGTGG--ATTACAC 238796 || || ||| ||||| ||||| ||||| ||||| |||||||| || || || ||| ||| Sbjct 270686 GATGG-ACGCGATCCGAACGGTTACGTCGGTTGCATGTGGTCGAT-TGCGGGCATT-CAC 270742 Query 238797 GATAGGGCATGGTCTGAGAGACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGGA 238856 ||| || |||| ||| | || || || ||| |||| |||||||| ||||||||| Sbjct 270743 GATCAGGGATGGAAGGAGCGTGAAATTTTCGGCAAAATTAGGTACATGAACTATGAAGGA 270802 Query 238857 ACTAAGAAAAAATTTGATGTAAATGCTTT 238885 ||| |||||| | || ||||| || Sbjct 270803 TGCAAGCGTAAATTTAACGTCAATGCGTT 270831 Score = 104 bits (114), Expect = 5e-17 Identities = 183/267 (69%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 268750 ACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGA 268809 |||||| | ||||| || ||||| || ||||| || |||||||| | ||| | | ||| Sbjct 708796 ACAGGCGGAAGCTTCGTTCTGGACCGTGGAAGAGGTGGATCTGTCCAAGGACATGAAAGA 708737 Query 268810 TTGGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGC 268869 ||| | || ||||| ||| | ||||| || | | ||||| || ||||| Sbjct 708736 CTGGGATTCGTTGAAACCGAGCGAACGCCACTTTATCTCGCACGTACTTGCCTTCTTTGC 708677 Query 268870 AGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGAT 268929 | ||||| ||||| |||||||| || || || ||| | || ||||||||| | Sbjct 708676 CGCATCCGATGGCATCGTGAACGAAAACCTGGTCGAACGTTTCAGCCAGGAGGTACAGGT 708617 Query 268930 TCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGAT 268989 | ||||| | ||||||||||| || || ||||| || |||||| | || ||||| Sbjct 708616 AACGGAAGCTCGCTGTTTTTACGGCTTTCAAATAGCGATGGAAAATGTGCACAGCGAGAT 708557 Query 268990 GTACAGTCTATTAATAGATACTTATAT 269016 |||| || |||| || || || || Sbjct 708556 GTACTCACTGCTAATCGACACGTACAT 708530 >seq575 Length=281738 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || || || |||||||| ||||||||||| || || | || || Sbjct 24158 AAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGACAGTGTGCGTCCATC 24099 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || || || || | | ||| ||||| || || || || || ||||| Sbjct 24098 CTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCCTTATC 24039 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| ||||| || || ||||| || | ||||| || || ||||| || |||||||| Sbjct 24038 CTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATAGT 23979 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| || || ||||| || || |||||||| Sbjct 23978 CTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 23946 >seq552 Length=280564 Score = 84.2 bits (92), Expect = 5e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 165275 AAACCTTTACTTTTCTGTCCAGCTATGAATACACTTATGTGGGAACATCCTATTACTGAG 165334 ||||| || |||||||| || || ||||| || | ||||||| ||||||| ||||| || Sbjct 109766 AAACCATTGCTTTTCTGCCCGGCCATGAACACGCGTATGTGGCAACATCCGATTACCGAA 109825 Query 165335 CAGCATATAGAAACTCTTAAGCATATGGGGTACATAGAAGTTGAGTGTATTGAGAAAAAG 165394 | || |||| ||| || ||| ||| || ||| | |||||| | ||||| Sbjct 109826 CTTCAAATAGCAACGCTAAAGTCCTGGGGCCACCGAGAGATACCGTGTATCGCGAAAACA 109885 Query 165395 CTAGCTTGTGGTGATATTGGAAAAGGTGCCATGGCAGAAGT 165435 || |||||||||| ||| ||||| ||||||||||| Sbjct 109886 CTCATGTGTGGTGATACGGGAGTGGGTGCGATGGCAGAAGT 109926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151377864809536