Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_005337.1
Length=134431
Score E
Sequences producing significant alignments: (Bits) Value
seq561 98.7 9e-16
>seq561
Length=1311501
Score = 98.7 bits (108), Expect = 9e-16
Identities = 173/250 (69%), Gaps = 4/250 (2%)
Strand=Plus/Minus
Query 5504 CCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTCC 5563
|| || || || || || ||||| |||| ||| || || || || | |||||||
Sbjct 776050 CCGGTAGATCCAAAACCTCCTGCACCTCGTTCTGTGTCCGTAAGCGTCGGAAGCTCTTCC 775991
Query 5564 ACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACC 5623
| ||| || |||| |||||| || | ||| || || || || || |||| ||
Sbjct 775990 AAATCTGGATACGCTATTTTCTCGCAAATGAACTGTGCGATACGATCACCTTTCTTGACT 775931
Query 5624 TCGAAATCGTTGTGGCCGAAG--TTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGG 5681
||||| || | |||| ||||||||||| || || ||||| |||||||||||
Sbjct 775930 TCGAAGTCTACTT--CCGAGTGATTGAACAGCACTACACCAACGTTACCGCGGTAGTCCT 775873
Query 5682 CGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAG 5741
| || | ||||| || ||||| |||||||| | ||| || |||| || || || ||||
Sbjct 775872 CATCAACGACGCCGGCTCCCACATCGATGAAATTCTTCACAGCCAACCCAGAACGAGGAG 775813
Query 5742 CCACGCGGCC 5751
| || |||||
Sbjct 775812 CAACCCGGCC 775803
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430047104127104
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |