Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq561 98.7 9e-16 >seq561 Length=1311501 Score = 98.7 bits (108), Expect = 9e-16 Identities = 173/250 (69%), Gaps = 4/250 (2%) Strand=Plus/Minus Query 5504 CCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTCC 5563 || || || || || || ||||| |||| ||| || || || || | ||||||| Sbjct 776050 CCGGTAGATCCAAAACCTCCTGCACCTCGTTCTGTGTCCGTAAGCGTCGGAAGCTCTTCC 775991 Query 5564 ACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACC 5623 | ||| || |||| |||||| || | ||| || || || || || |||| || Sbjct 775990 AAATCTGGATACGCTATTTTCTCGCAAATGAACTGTGCGATACGATCACCTTTCTTGACT 775931 Query 5624 TCGAAATCGTTGTGGCCGAAG--TTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGG 5681 ||||| || | |||| ||||||||||| || || ||||| ||||||||||| Sbjct 775930 TCGAAGTCTACTT--CCGAGTGATTGAACAGCACTACACCAACGTTACCGCGGTAGTCCT 775873 Query 5682 CGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAG 5741 | || | ||||| || ||||| |||||||| | ||| || |||| || || || |||| Sbjct 775872 CATCAACGACGCCGGCTCCCACATCGATGAAATTCTTCACAGCCAACCCAGAACGAGGAG 775813 Query 5742 CCACGCGGCC 5751 | || ||||| Sbjct 775812 CAACCCGGCC 775803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430047104127104