Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq575 122 7e-23
seq672 107 2e-18
>seq575
Length=281738
Score = 122 bits (134), Expect = 7e-23
Identities = 166/232 (72%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| ||||||| | | ||| | |||||| || |||||| |||||||| || ||||
Sbjct 24173 ACCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGA 24114
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
|| | || | |||||||||||||||||| || | || ||||||||||||||| |||
Sbjct 24113 CAGTGTGCGTCCATCCTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCCGGCGG 24054
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | ||||| ||| || ||| ||| | | | | || ||||| | | |||
Sbjct 24053 GATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 23994
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730
||| | || || || ||||| ||||| ||||| || || ||||||||||||
Sbjct 23993 CTCAAGGGTAATAGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCGTG 23942
>seq672
Length=1102954
Score = 107 bits (118), Expect = 2e-18
Identities = 152/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575
||| | |||||| || ||||| ||||||||||| || | || | || || | ||||
Sbjct 391594 CACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGTG-CGGCCATCCT 391652
Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635
|||||||||||||| || | || | |||||||||||| || | | |||||| |||
Sbjct 391653 CCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATTCCTTCCTTATCCT 391712
Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695
||| || ||| | | | || || || | || ||| ||| | ||| ||||| |
Sbjct 391713 GAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCT 391772
Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
| |||||||| |||||||| |||||||||||
Sbjct 391773 TGCCGGTGAGTGTTTTCACGAAAATCTGCAT 391803
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421244053473392
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |