Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq575 122 7e-23 seq672 107 2e-18 >seq575 Length=281738 Score = 122 bits (134), Expect = 7e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||||| | | ||| | |||||| || |||||| |||||||| || |||| Sbjct 24173 ACCACCGCGCAGGCGAAGCACCAGATGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGA 24114 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || | || | |||||||||||||||||| || | || ||||||||||||||| ||| Sbjct 24113 CAGTGTGCGTCCATCCTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCCGGCGG 24054 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||| ||| || ||| ||| | | | | || ||||| | | ||| Sbjct 24053 GATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 23994 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||| | || || || ||||| ||||| ||||| || || |||||||||||| Sbjct 23993 CTCAAGGGTAATAGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCGTG 23942 >seq672 Length=1102954 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| | |||||| || ||||| ||||||||||| || | || | || || | |||| Sbjct 391594 CACCAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAGAGTG-CGGCCATCCT 391652 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||||||| || | || | |||||||||||| || | | |||||| ||| Sbjct 391653 CCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCTGGGGGAATTCCTTCCTTATCCT 391712 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||| || ||| | | | || || || | || ||| ||| | ||| ||||| | Sbjct 391713 GAATCTTTGCCTTCACATTTTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCT 391772 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | |||||||| |||||||| ||||||||||| Sbjct 391773 TGCCGGTGAGTGTTTTCACGAAAATCTGCAT 391803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421244053473392