Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28] 1,392 sequences; 225,223,604 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq571 87.8 9e-13 seq537 86.0 3e-12 seq1371 84.2 1e-11 >seq571 Length=259671 Score = 87.8 bits (96), Expect = 9e-13 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 11451 CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 || |||||| | || |||||||||| ||||||||||||||||||||||||||||| | Sbjct 131706 CACATTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAA 131647 Query 11511 CCAACTGAGCTA 11522 ||| |||||||| Sbjct 131646 CCAGCTGAGCTA 131635 Score = 87.8 bits (96), Expect = 9e-13 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 133487 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 133428 Query 11515 CTGAGCTAATGGGCCGT 11531 |||||||| | ||||| Sbjct 133427 CTGAGCTATGGAGCCGT 133411 Score = 86.0 bits (94), Expect = 3e-12 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 70733 ATTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCA 70792 Query 11514 ACTGAGCTA 11522 |||||||| Sbjct 70793 GCTGAGCTA 70801 >seq537 Length=303086 Score = 86.0 bits (94), Expect = 3e-12 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||| | || |||||||||| ||||||||||||||||||||||||||||| || Sbjct 32870 AATTTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAAC 32811 Query 11512 CAACTGAGCTAATGGGCCG 11530 || |||||||| | |||| Sbjct 32810 CAGCTGAGCTATGGAGCCG 32792 Score = 86.0 bits (94), Expect = 3e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 33414 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 33355 Query 11516 TGAGCTAATGGGCC 11529 ||||||| ||||| Sbjct 33354 TGAGCTATGGGGCC 33341 Score = 84.2 bits (92), Expect = 1e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 62256 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 62315 Query 11515 CTGAGCTA 11522 |||||||| Sbjct 62316 CTGAGCTA 62323 Score = 82.4 bits (90), Expect = 4e-11 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 63061 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 63120 Query 11516 TGAGCTA 11522 ||||||| Sbjct 63121 TGAGCTA 63127 >seq1371 Length=727002 Score = 84.2 bits (92), Expect = 1e-11 Identities = 74/91 (81%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 11444 AAAAAAT-CAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||||||| ||| | |||| | || |||||||||| |||||||||||||||||||| Sbjct 26699 AAAAAATACAACTGTGTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCA 26640 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||| |||| |||||||| | |||| Sbjct 26639 CGACGCTCTAACCAGCTGAGCTATGGAGCCG 26609 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261486763801792