Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20funestus_20[genbank_20GCA_5F000349085.1_202013-03-28]
1,392 sequences; 225,223,604 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq571 87.8 9e-13
seq537 86.0 3e-12
seq1371 84.2 1e-11
>seq571
Length=259671
Score = 87.8 bits (96), Expect = 9e-13
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 11451 CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510
|| |||||| | || |||||||||| ||||||||||||||||||||||||||||| |
Sbjct 131706 CACATTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAA 131647
Query 11511 CCAACTGAGCTA 11522
||| ||||||||
Sbjct 131646 CCAGCTGAGCTA 131635
Score = 87.8 bits (96), Expect = 9e-13
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||| | || |||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 133487 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 133428
Query 11515 CTGAGCTAATGGGCCGT 11531
|||||||| | |||||
Sbjct 133427 CTGAGCTATGGAGCCGT 133411
Score = 86.0 bits (94), Expect = 3e-12
Identities = 60/69 (87%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513
|||||| | || |||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 70733 ATTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCA 70792
Query 11514 ACTGAGCTA 11522
||||||||
Sbjct 70793 GCTGAGCTA 70801
>seq537
Length=303086
Score = 86.0 bits (94), Expect = 3e-12
Identities = 66/79 (84%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
|| ||||| | || |||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 32870 AATTTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAAC 32811
Query 11512 CAACTGAGCTAATGGGCCG 11530
|| |||||||| | ||||
Sbjct 32810 CAGCTGAGCTATGGAGCCG 32792
Score = 86.0 bits (94), Expect = 3e-12
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||| | || |||||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct 33414 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 33355
Query 11516 TGAGCTAATGGGCC 11529
||||||| |||||
Sbjct 33354 TGAGCTATGGGGCC 33341
Score = 84.2 bits (92), Expect = 1e-11
Identities = 59/68 (87%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||| | || |||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 62256 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 62315
Query 11515 CTGAGCTA 11522
||||||||
Sbjct 62316 CTGAGCTA 62323
Score = 82.4 bits (90), Expect = 4e-11
Identities = 58/67 (87%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||| | || |||||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct 63061 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 63120
Query 11516 TGAGCTA 11522
|||||||
Sbjct 63121 TGAGCTA 63127
>seq1371
Length=727002
Score = 84.2 bits (92), Expect = 1e-11
Identities = 74/91 (81%), Gaps = 4/91 (4%)
Strand=Plus/Minus
Query 11444 AAAAAAT-CAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499
||||||| ||| | |||| | || |||||||||| ||||||||||||||||||||
Sbjct 26699 AAAAAATACAACTGTGTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCA 26640
Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCCG 11530
||||||||| |||| |||||||| | ||||
Sbjct 26639 CGACGCTCTAACCAGCTGAGCTATGGAGCCG 26609
Lambda K H
0.639 0.410 0.921
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261486763801792
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |